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Protein Overview: gi|24348441, gi|...

General Information:
Name(s) found: gi|24373987 [NCBI NR]
gi|24348441 [NCBI NR]
Description(s) found:
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  • gi|24373987|ref|NP_718030.1| thiamine biosynthesis protein ThiH [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348441|gb|AAN55474.1|AE015685_3 thiH protein [Shewanella oneidensis MR-1] [NCBI NR]
  • thiH protein [Shewanella oneidensis MR-1]gi|24348441|gb|AAN55474.1| thiH protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • thiH protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
  • thiamine biosynthesis protein ThiH [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: thiamin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVDHFARI ERDKLLLALY SCTAADVERA LVQPEGNLQS LLALLSPAAE PYIEEMAQRS  60
   61 AALTRQRFGA NIGLYLPLYL SNLCANECDY CGFSMSNKLK RKVLNEQELA AEIAIIKSRG 120
  121 FDSILLVSGE HETKVGMDYF QRVLPLVKQQ FSYLAMEVQP LEESHYRKLV EQGLDAVMVY 180
  181 QETYQAETYA KHHTRGKKQD FAYRLATPDR VARAGVDKIG LGVLLGLDDW RLDALMMGYH 240
  241 LDYLERHYWR TRFSISLPRL RPCTGGIAPK VHLTDLGLVQ MICTFRLFNQ QLDISLSTRE 300
  301 APSLRDNLLP LGITQMSAGS STQPGGYQVP DSQLDQFEIS DDRTVEQVIT QMRLKGFNPV 360
  361 FKDWESAWIV PKMRV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..375] PSI-BLAST 58.30103 The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • biotin synthase activity
    		•  2.91919723818354 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  2.77364380055213 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  1.98245715445185 bayes_pls_golite062009
  • catalytic activity
    		•  1.85375915825216 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  1.02075980126493 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle