YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348441, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348441, gi|....

Description	E-value	Query Range	Subject Range
gi\|37200138, gi\|... - gi\|37681386\|ref\|NP_935995.1\| thiamine biosynthesis protein ThiH [Vibrio vulnificus YJ016], gi\|372001...	277.0	[0..1]	[368..1]
gi\|27364398, gi\|... - gi\|27364398\|ref\|NP_759926.1\| thiamine biosynthesis protein ThiH [Vibrio vulnificus CMCP6], gi\|273605...	276.0	[0..1]	[368..1]
gi\|75855402, gi\|... - gi\|75855402\|ref\|ZP_00763054.1\| COG1060: Thiamine biosynthesis enzyme ThiH and related uncharacterize...	273.0	[0..1]	[368..1]
gi\|90412772, gi\|... - gi\|90412772\|ref\|ZP_01220773.1\| thiamine biosynthesis protein ThiH [Photobacterium profundum 3TCK], g...	273.0	[0..1]	[368..1]
gi\|91228040, gi\|... - gi\|91228040\|ref\|ZP_01262125.1\| thiamine biosynthesis protein ThiH [Vibrio alginolyticus 12G01], gi\|9...	272.0	[0..1]	[368..1]
gi\|153839508, gi... - gi\|153839508\|ref\|ZP_01992175.1\| thiazole biosynthesis protein ThiH [Vibrio parahaemolyticus AQ3810],... gi\|28899796, gi\|... - gi\|28899796\|ref\|NP_799401.1\| thiamine biosynthesis protein ThiH [Vibrio parahaemolyticus RIMD 221063... gi\|28808048 - gi\|28808048\|dbj\|BAC61285.1\| ThiH protein [Vibrio parahaemolyticus RIMD 2210633]	272.0	[0..1]	[368..1]
gi\|54307331, gi\|... - gi\|54307331\|ref\|YP_128351.1\| thiamine biosynthesis protein ThiH [Photobacterium profundum SS9], gi\|4...	272.0	[0..1]	[368..1]
gi\|89049712, gi\|... - gi\|89074424\|ref\|ZP_01160901.1\| thiamine biosynthesis protein ThiH [Photobacterium sp. SKA34], gi\|890...	270.0	[0..1]	[368..1]
gi\|77977806 - gi\|77977806\|ref\|ZP_00833246.1\| COG1060: Thiamine biosynthesis enzyme ThiH and related uncharacterize...	266.0	[0..1]	[366..1]
gi\|90581021, gi\|... - gi\|90581021\|ref\|ZP_01236821.1\| thiamine biosynthesis protein ThiH [Vibrio angustum S14], gi\|90437717...	265.0	[0..1]	[368..1]

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Predicted Domain #1

Region A:
Residues: [1-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVDHFARI ERDKLLLALY SCTAADVERA LVQPEGNLQS LLALLSPAAE PYIEEMAQRS  60
   61 AALTRQRFGA NIGLYLPLYL SNLCANECDY CGFSMSNKLK RKVLNEQELA AEIAIIKSRG 120
  121 FDSILLVSGE HETKVGMDYF QRVLPLVKQQ FSYLAMEVQP LEESHYRKLV EQGLDAVMVY 180
  181 QETYQAETYA KHHTRGKKQD FAYRLATPDR VARAGVDKIG LGVLLGLDDW RLDALMMGYH 240
  241 LDYLERHYWR TRFSISLPRL RPCTGGIAPK VHLTDLGLVQ MICTFRLFNQ QLDISLSTRE 300
  301 APSLRDNLLP LGITQMSAGS STQPGGYQVP DSQLDQFEIS DDRTVEQVIT QMRLKGFNPV 360
  361 FKDWESAWIV PKMRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	1r30A
Description:	The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
biotin synthase activity	2.91919723818354	bayes_pls_golite062009
radical SAM enzyme activity	2.77364380055213	bayes_pls_golite062009
sulfurtransferase activity	1.98245715445185	bayes_pls_golite062009
catalytic activity	1.85375915825216	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	1.02075980126493	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: