YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24348307, gi|...

General Information:
Name(s) found: gi|24373888 [NCBI NR]
gi|24348307 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24373888|ref|NP_717931.1| dihydrolipoamide acetyltransferase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348307|gb|AAN55375.1|AE015675_7 alpha keto acid dehydrogenase complex, E2 component [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 535 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cellular amino acid catabolic process [ISSLink to PubMed article]
    Molecular Function: alpha-ketoacid dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKDFILPDI GEGVVECELV EWLVKEGDTI VEDQPIADVM TDKALVQIPA PFAGVVTKLY  60
   61 YAKGDIAKVH APLYAVQIEA EEPSSQVAPQ TVEHSAPNQA AISAASSSIE QFLLPDIGEG 120
  121 IVECELVEWL VQEGDIVVED QPIADVMTDK ALVQIPAIKA GKIVKLHYRK GQLAKVHAPL 180
  181 YAIEVEGGVI PAVSAHETTN VAVANTATSA ACATASVSQE PARQGKALAS PAVRRMARAL 240
  241 DIDLSRVPGS GKHGRVYKED ISRFQAQGSA TPVVAPVATA STQQSSVTQS AVPITVASAA 300
  301 RADIVEPIRG VKAVMAKLMV ESVSTIPHFT YCEEFDLTDL VALRESMKAK YSSDEVKLTM 360
  361 MPFFMKAMSL ALTQFPVLNS QVNADCTEIT YKARHNIGMA VDSKVGLLVP NVKDVQDKSI 420
  421 LEVAAEITRL TNAARSGRVA PADLKEGTIS ISNIGALGGT VATPIINKPE VAIVALGKLQ 480
  481 TLPRFNAKGE VEARQIMQVS WSGDHRVIDG GTIARFCNLW KQYLEQPQDM LLAMR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] PSI-BLAST 17.69897 THREE-DIMENSIONAL STRUCTURE OF THE LIPOYL DOMAIN FROM BACILLUS STEAROTHERMOPHILUS PYRUVATE DEHYDROGENASE MULTIENZYME COMPLEX
    2 View Details [91..286] PSI-BLAST 23.221849 The crystal structure of dihydrolipoamide dehydrogenase and dihydrolipoamide dehydrogenase-binding protein (didomain) subcomplex of human pyruvate dehydrogenase complex.
    3 View Details [287..535] PSI-BLAST 76.045757 No description for 2ihwA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • dihydrolipoyllysine-residue acetyltransferase activity
    		•  7.74877411346968 bayes_pls_golite062009
  • S-acetyltransferase activity
    		•  7.59642806209362 bayes_pls_golite062009
  • dihydrolipoamide S-acyltransferase activity
    		•  7.45508609960612 bayes_pls_golite062009
  • pyruvate dehydrogenase activity
    		•  7.05950875585975 bayes_pls_golite062009
  • S-acyltransferase activity
    		•  5.24395351180663 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.55333192628786 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  3.31123635155865 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  2.83081843426182 bayes_pls_golite062009
  • CoA carboxylase activity
    		•  2.82233689048595 bayes_pls_golite062009
  • acyltransferase activity
    		•  2.79754636323803 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  2.53708026587542 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  2.22092493760605 bayes_pls_golite062009
  • catalytic activity
    		•  1.39099902011318 bayes_pls_golite062009
  • binding
    		•  0.988780943163898 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.629490807878017 bayes_pls_golite062009
  • ligase activity
    		•  0.56894584941056 bayes_pls_golite062009
  • aminomethyltransferase activity
    		•  0.377624262164477 bayes_pls_golite062009
  • protein binding
    		•  0.273657523907432 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  0.0222922933292004 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  0.0222922933292004 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle