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Protein Overview: gi|24373659, gi|...

General Information:
Name(s) found: gi|24373659 [NCBI NR]
gi|24348006 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24373659|ref|NP_717702.1| quinone-reactive Ni/Fe hydrogenase, small subunit precursor [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348006|gb|AAN55146.1|AE015651_5 quinone-reactive Ni/Fe hydrogenase, small subunit precursor [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 378 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: ferredoxin hydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHAALYEQ GKARLDALRQ FAPRQQQTLL EKLQQHGISR RDFMKWSAMV TGMLALPLPF  60
   61 SNLVAEAAEL ADRVPLIWLH MAECTGCSES LVRADTPNLD SLIFDHISLE YHETLMAAAG 120
  121 WQAEENLEHA LETYKGRYLL AVEGAIPTAN NGSFLTVGCK GHTGLEIVKH AAEGAAAIIS 180
  181 VGTCAAFGGV QAAYPNPTGA KGVHEVVSKP VINLGGCPPS EKNIVGTLMY FIMFGKLPAL 240
  241 DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDHGAKE GYCLYKVGCK GPYTYNNCPT 300
  301 ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT VGAVILGATV 360
  361 VGIGAHAVAS IFAKPLEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..378] PSI-BLAST 108.0 Nickel-iron hydrogenase, small subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • NADH dehydrogenase activity
    		•  3.61184363435996 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  3.21332704782489 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  3.16261758978631 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  2.73746738143767 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  2.4366803408949 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.96211174351027 bayes_pls_golite062009
  • oxidoreductase activity, acting on hydrogen as donor
    		•  1.94254997143399 bayes_pls_golite062009
  • catalytic activity
    		•  1.41356903593784 bayes_pls_golite062009
  • ferredoxin hydrogenase activity
    		•  1.17664896715936 bayes_pls_golite062009
  • oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
    		•  1.17664896715936 bayes_pls_golite062009
  • oxidoreductase activity, acting on iron-sulfur proteins as donors
    		•  0.100407685917506 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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