YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373659, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHAALYEQ GKARLDALRQ FAPRQQQTLL EKLQQHGISR RDFMKWSAMV TGMLALPLPF  60
   61 SNLVAEAAEL ADRVPLIWLH MAECTGCSES LVRADTPNLD SLIFDHISLE YHETLMAAAG 120
  121 WQAEENLEHA LETYKGRYLL AVEGAIPTAN NGSFLTVGCK GHTGLEIVKH AAEGAAAIIS 180
  181 VGTCAAFGGV QAAYPNPTGA KGVHEVVSKP VINLGGCPPS EKNIVGTLMY FIMFGKLPAL 240
  241 DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDHGAKE GYCLYKVGCK GPYTYNNCPT 300
  301 ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT VGAVILGATV 360
  361 VGIGAHAVAS IFAKPLEE

Type	Start	End	Confidence
Cytoplasmic	1	45	0.54
Transmembrane Helix	46	60	0.31
Non-Cytoplasmic	61	349	0.67
Transmembrane Helix	350	372	0.57
Cytoplasmic	373	378	0.34