YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373659, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373659, gi|....

Description	E-value	Query Range	Subject Range
gi\|90425256, gi\|... - gi\|90425256\|ref\|YP_533626.1\| hydrogenase (NiFe) small subunit (hydA) [Rhodopseudomonas palustris Bis...	475.0	[0..23]	[377..2]
gi\|217973571, gi... - gi\|217973571\|ref\|YP_002358322.1\| hydrogenase (NiFe) small subunit HydA [Shewanella baltica OS223], g... gi\|153000440, gi... - gi\|153000440\|ref\|YP_001366121.1\| hydrogenase (NiFe) small subunit HydA [Shewanella baltica OS185], g... gi\|113949947, gi... - gi\|160875037\|ref\|YP_001554353.1\| hydrogenase (NiFe) small subunit HydA [Shewanella baltica OS195], g...	474.0	[0..1]	[378..1]
gi\|117920325, gi... - gi\|78684968\|ref\|ZP_00849749.1\| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway ...	474.0	[0..1]	[378..1]
gi\|113889092, gi... - gi\|114047650\|ref\|YP_738200.1\| hydrogenase (NiFe) small subunit HydA [Shewanella sp. MR-7], gi\|113889...	474.0	[0..1]	[378..1]
gi\|68542566, gi\|... - gi\|68542566\|ref\|ZP_00582294.1\| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway ...	473.0	[0..1]	[378..1]
gi\|192283313, gi... - gi\|192289564\|ref\|YP_001990169.1\| hydrogenase (NiFe) small subunit HydA [Rhodopseudomonas palustris T... hupS - hupS hydrogenase small chain 1064173:1065285 forward MW:40275	473.0	[0..26]	[373..5]
gi\|82405693, gi\|... - gi\|82496337\|ref\|ZP_00881906.1\| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway ...	473.0	[0..1]	[378..1]
gi\|77701269, gi\|... - gi\|77738801\|ref\|ZP_00807294.1\| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway ...	470.0	[0..23]	[373..2]
gi\|126637988, gi... - gi\|78367342\|ref\|ZP_00837612.1\| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway ...	470.0	[0..1]	[378..1]
gi\|77809302, gi\|... - gi\|77815731\|ref\|ZP_00814953.1\| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway ... gi\|124509403, gi... - gi\|124547251\|ref\|ZP_01706198.1\| hydrogenase (NiFe) small subunit HydA [Shewanella putrefaciens 200],... gi\|82744016, gi\|... - gi\|82744016\|ref\|ZP_00906622.1\| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway ...	470.0	[0..1]	[378..1]

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Predicted Domain #1

Region A:
Residues: [1-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHAALYEQ GKARLDALRQ FAPRQQQTLL EKLQQHGISR RDFMKWSAMV TGMLALPLPF  60
   61 SNLVAEAAEL ADRVPLIWLH MAECTGCSES LVRADTPNLD SLIFDHISLE YHETLMAAAG 120
  121 WQAEENLEHA LETYKGRYLL AVEGAIPTAN NGSFLTVGCK GHTGLEIVKH AAEGAAAIIS 180
  181 VGTCAAFGGV QAAYPNPTGA KGVHEVVSKP VINLGGCPPS EKNIVGTLMY FIMFGKLPAL 240
  241 DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDHGAKE GYCLYKVGCK GPYTYNNCPT 300
  301 ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT VGAVILGATV 360
  361 VGIGAHAVAS IFAKPLEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1h2aS
Description:	Nickel-iron hydrogenase, small subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
NADH dehydrogenase activity	3.61184363435996	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	3.21332704782489	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	3.16261758978631	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	2.73746738143767	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	2.4366803408949	bayes_pls_golite062009
oxidoreductase activity	1.96211174351027	bayes_pls_golite062009
oxidoreductase activity, acting on hydrogen as donor	1.94254997143399	bayes_pls_golite062009
catalytic activity	1.41356903593784	bayes_pls_golite062009
ferredoxin hydrogenase activity	1.17664896715936	bayes_pls_golite062009
oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor	1.17664896715936	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors	0.100407685917506	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: