YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24347931, gi|...

General Information:
Name(s) found: gi|24373600 [NCBI NR]
gi|24347931 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|24373600|ref|NP_717643.1| soluble lytic murein transglycosylase, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347931|gb|AAN55087.1|AE015646_2 soluble lytic murein transglycosylase, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • soluble lytic murein transglycosylase, putative [Shewanella oneidensis MR-1]gi|24347931|gb|AAN55087.1| soluble lytic murein transglycosylase, putative [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • soluble lytic murein transglycosylase, putative [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 641 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan catabolic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNPLTKMVL SSAIIIAGAF NASAAFALTS TQKTFIEAEK ALKKQDYATY KPLRAKLGEY  60
   61 PLAIYLDHDM DIGKLNDLRG NDAKLLIDKY QTTPMYQRLR LKYLLNAGGQ KRWNDFLSLA 120
  121 QDAPTDVRLQ CYFYEAKLAK GEIQTAYTAA QSLWIYGDSR PKECDSLFNT WTKAGKRTQE 180
  181 VIWARMLLSF DEGQTSLLSF LSQKITVHSA EAKRLVAVFK DPNSLRHTEK FKDKNPIVGD 240
  241 IVAAGLKRLA RKDLDQAIDL YSHYQKAKRF SPAQDQQLQK YLVRRVLIEQ DDNFKDWADN 300
  301 LLPEMKSDDM FERRLRWAIR EQDSTHIARY LDLLSPETQS KERWQYWLYR TNAQHAPESA 360
  361 TKALAAVSNE RGFYGFAASQ LLNKPVSLNK SPEPVVDVNS PKIEDDLGFV RVQELMALDR 420
  421 YFDARYEWVA LLKRSNNDMR ARYGRYAHDQ GWYDFGVEAS IQGKLWDDIP LRFPVAHQSG 480
  481 FEHASKKHKV NIDEIRAISR RESAFYLYAT SGVGARGLMQ IMPATAKATA KKHGAKYNDP 540
  541 KDLYSAELNL NLGSAYYAQL LKEFNQNRVL ATAAYNAGPS RVRRWLSESN GQLDAMSFIE 600
  601 SIPFTETREY VQAVLSYRLI YEAQKQKPLP LFNEAELKFH Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..641] PSI-BLAST 119.0 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  2.78686842118168 bayes_pls_golite062009
  • hydrolase activity
    		•  2.57229987516572 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  2.44447583797891 bayes_pls_golite062009
  • penicillin binding
    		•  2.44231807818811 bayes_pls_golite062009
  • drug binding
    		•  1.87994419885538 bayes_pls_golite062009
  • lysozyme activity
    		•  1.69912171793125 bayes_pls_golite062009
  • catalytic activity
    		•  1.5828442141425 bayes_pls_golite062009
  • binding
    		•  0.477631821592575 bayes_pls_golite062009
  • chitinase activity
    		•  0.46668092246662 bayes_pls_golite062009
  • peptidase activity
    		•  0.365510090447337 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  0.129651578108655 bayes_pls_golite062009
  • protein binding
    		•  0.054632843930027 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle