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Protein Overview: gi|24373262, gi|...

General Information:
Name(s) found: gi|24373262 [NCBI NR]
gi|24347499 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24373262|ref|NP_717305.1| FAD-binding protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347499|gb|AAN54749.1|AE015615_5 FAD-binding protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 894 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein-FAD linkage [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPPQMTQAQ LSTQPTELTQ KTAHKHNLVK TLVQDAGTLN VFTFQAWVKT HQGGVVFQYY  60
   61 SQTNNTGFTI NINALGHIET LVNSQLLQIE TISTLGNLND GYWHLLSITY QYHELTCYID 120
  121 GEEIHLQQHS IPLSDDRKLK LTNETSTLFD GEIVNINLIE QCLTKHQILD YYLQPQHQIT 180
  181 LTDNNLYIYP KNQIKPSTNF HPNFATRQEV MLIIFNDTDY NFSKQNLNTN NFKKQLPHII 240
  241 PAHECCAYII ESNFGQWPHF IYLVNYHSEE STNITLSFDI LKSLTPNRSH IKLQLSNELE 300
  301 FDCFISQSTS SRLTAEIRIS ENVVTRQVTH FMRFINEVRS HIPSENIITD GQYYAEQDFW 360
  361 VSTGQQMLAY EKACQLFNRR LQKKPLAIIK CRTRQDVKIV YKTAVDYHLA ISVRSSGHDH 420
  421 EGESGETNSI VLDLELMNDI ELDPISGIVA IEPGCTIGNI TSYLAQKGLM LPHSTSASHA 480
  481 LAGFIMGGGW GPWCRKYGMC CEGLVQAEIV LGVGETQVVS AANKPELLWA LKGGGGLSYG 540
  541 IVTRFFVQTF ALPPSLLKFE LEWNPYLQDG QQLQQTTPTL GLLERWEQLI LADNHPSLLG 600
  601 TNLKIQAKSA IVEEQKRPLA SSVPETEDPM FAKHNCIMYG YWEGNPASLA HFIKTQFSEV 660
  661 GLKPSRVQID AMGGLTQAYG DELMESWNRE TIQDLQPILN HRMTELINDK DIQLYKNQRQ 720
  721 HAQDLLRPAP HKVTSRLAHS QGLKQGHIAL IESLTSSQLI EDNRQLGLFT YVTLSAITGD 780
  781 FYRTLGDAKK TQSAFAFKDH AYIVQFQAWW NNELQEQVLM QANPVYTRVN RALDWIDSCR 840
  841 DATIANSSGA FINFKDNTIP TARYFGKNYP LLQQVKASYC QDPLNHFRSR KSII

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..285] PSI-BLAST 5.522879 No description for 2omxA was found.
    2 View Details [286..615] PSI-BLAST 46.09691 Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
    3 View Details [616..894] FFAS03 2.09 The crystal structure of an Acremonium strictum glucooligosaccharide oxidase reveals a novel flavinylation

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  0.0647200923275959 bayes_pls_golite062009
  • catalytic activity
    		•  0.026700718862221 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle