YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373262, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	894 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373262, gi|....

Description	E-value	Query Range	Subject Range
gi\|78685599, gi\|... - gi\|78685599\|ref\|ZP_00850376.1\| FAD-binding protein [Shewanella sp. ANA-3], gi\|78506717\|gb\|EAP20233.1...	542.0	[0..1]	[894..1]
gi\|78689389, gi\|... - gi\|78689389\|ref\|ZP_00854051.1\| FAD-binding protein [Shewanella sp. MR-7], gi\|78511126\|gb\|EAP24486.1\|...	540.0	[0..7]	[894..17]
gi\|82405569, gi\|... - gi\|82496420\|ref\|ZP_00881988.1\| FAD-binding protein [Shewanella sp. MR-4], gi\|82405569\|gb\|EAP46241.1\|...	534.0	[0..7]	[894..17]
gi\|145564202, gi... - gi\|77812926\|ref\|ZP_00812209.1\| FAD linked oxidase, N-terminal [Shewanella putrefaciens CN-32], gi\|77...	431.0	[0..20]	[894..4]
gi\|82742564, gi\|... - gi\|82742564\|ref\|ZP_00905252.1\| FAD-binding protein [Shewanella sp. W3-18-1], gi\|82720074\|gb\|EAP54952...	430.0	[0..20]	[894..4]
gi\|113947524, gi... - gi\|160874656\|ref\|YP_001553972.1\| FAD linked oxidase domain-containing protein [Shewanella baltica OS...	414.0	[0..30]	[894..16]
gi\|68519843, gi\|... - gi\|68542460\|ref\|ZP_00582190.1\| FAD linked oxidase, N-terminal [Shewanella baltica OS155], gi\|6851984...	289.0	[0..270]	[894..40]
gi\|15226830, gi\|... - pir\|\|T00461 probable berberine bridge enzyme [imported] - Arabidopsis thaliana, gi\|3033375\|gb\|AAC12...	266.0	[0..312]	[893..11]
gi\|91685822, gi\|... - gi\|91781868\|ref\|YP_557074.1\| putative FAD-binding oxidase [Burkholderia xenovorans LB400], gi\|916858...	261.0	[0..320]	[791..4]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPPQMTQAQ LSTQPTELTQ KTAHKHNLVK TLVQDAGTLN VFTFQAWVKT HQGGVVFQYY  60
   61 SQTNNTGFTI NINALGHIET LVNSQLLQIE TISTLGNLND GYWHLLSITY QYHELTCYID 120
  121 GEEIHLQQHS IPLSDDRKLK LTNETSTLFD GEIVNINLIE QCLTKHQILD YYLQPQHQIT 180
  181 LTDNNLYIYP KNQIKPSTNF HPNFATRQEV MLIIFNDTDY NFSKQNLNTN NFKKQLPHII 240
  241 PAHECCAYII ESNFGQWPHF IYLVNYHSEE STNITLSFDI LKSLT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	2omxA
Description:	No description for 2omxA was found.

Predicted functions:

Term	Confidence	Notes
protein binding	0.0647200923275959	bayes_pls_golite062009
catalytic activity	0.026700718862221	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [286-615]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNRSHIKLQL SNELEFDCFI SQSTSSRLTA EIRISENVVT RQVTHFMRFI NEVRSHIPSE  60
   61 NIITDGQYYA EQDFWVSTGQ QMLAYEKACQ LFNRRLQKKP LAIIKCRTRQ DVKIVYKTAV 120
  121 DYHLAISVRS SGHDHEGESG ETNSIVLDLE LMNDIELDPI SGIVAIEPGC TIGNITSYLA 180
  181 QKGLMLPHST SASHALAGFI MGGGWGPWCR KYGMCCEGLV QAEIVLGVGE TQVVSAANKP 240
  241 ELLWALKGGG GLSYGIVTRF FVQTFALPPS LLKFELEWNP YLQDGQQLQQ TTPTLGLLER 300
  301 WEQLILADNH PSLLGTNLKI QAKSAIVEEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.09691
Match:	2bvfA
Description:	Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [616-894]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRPLASSVPE TEDPMFAKHN CIMYGYWEGN PASLAHFIKT QFSEVGLKPS RVQIDAMGGL  60
   61 TQAYGDELME SWNRETIQDL QPILNHRMTE LINDKDIQLY KNQRQHAQDL LRPAPHKVTS 120
  121 RLAHSQGLKQ GHIALIESLT SSQLIEDNRQ LGLFTYVTLS AITGDFYRTL GDAKKTQSAF 180
  181 AFKDHAYIVQ FQAWWNNELQ EQVLMQANPV YTRVNRALDW IDSCRDATIA NSSGAFINFK 240
  241 DNTIPTARYF GKNYPLLQQV KASYCQDPLN HFRSRKSII

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.09
Match:	1zr6A
Description:	The crystal structure of an Acremonium strictum glucooligosaccharide oxidase reveals a novel flavinylation
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: