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Protein Overview: gi|24373068, gi|...

General Information:
Name(s) found: gi|24373068 [NCBI NR]
gi|24347247 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24373068|ref|NP_717111.1| glycogen branching enzyme [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347247|gb|AAN54555.1|AE015595_2 1,4-alpha-glucan branching enzyme [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 746 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: glycogen biosynthetic process [ISSLink to PubMed article]
    Molecular Function: 1,4-alpha-glucan branching enzyme activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTQAQTYFY DGSDVALLNG QYTDVFSLLG MHSINEGKAL VVRCFLRNAQ KVDVISLKDG  60
   61 RKVASLERVN EAGLFAGTLG RRIKPFLYAL RVTYPLCELD IIDPYQFGSL LNREDLYLFG 120
  121 EGSSEQAYRF LGANWRQVDN VEGVHFCVWA PNAKRVSVVG DFNHWDDTRH VMRQHVANGL 180
  181 WEIFLPGVVE GSHYKFDLVY QNGERHAKSD PMATQMECAP HNASIVPKKQ QHQWADTQWM 240
  241 DKRAATAWHR APMSIYEVQL GSWRRKGEFG EQYFDYQDLI EQLIPYVKEQ GFTHIELMPV 300
  301 SEYPFDGSWG YQPVGLYAPT YRFGDANGFK AFIDACHQAE IGVLLDWVAA HFPKDPHGLV 360
  361 RFDGTCLYEH EDPRKGTHPD WDTLIYNYGR GEVRSFLLSN ACYWLREFHL DGLRLDAVSS 420
  421 MLYLDYSREP GQWLPNAYGG RENLEAIDFL QMLNQRLYQA IPGICMIAEE STAFAGVTKP 480
  481 TDSSGLGFGF KWNMGWMNDS LSYLGRDPIY RQYHHNQLTF SLMYAYSEQF MLSISHDEVV 540
  541 HGKGSLLHKI PGDDWQKFAT LRAYYGFMWG HPGKKLLFMG SEFAQRDEWD HDHSLDWHLL 600
  601 AFEPHQGVQR WLRDLNQLYR QFPALSVLDY EPQGFRWLDC DNGRDSIFSF VRYGEGNDVP 660
  661 LVFVVNMTPT VHQGFRIGLP QGGDFCEYLN SDSYLYGGSN QGNGGKIIAQ ALPWQGMASS 720
  721 ALITVPPLGC LILGPATENI LRESAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] FFAS03 2.41 1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain
    2 View Details [123..746] PSI-BLAST 138.0 1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.81707419439683 bayes_pls_golite062009
  • protein binding
    		•  1.40303524581236 bayes_pls_golite062009
  • phosphorylase activity
    		•  0.99159540154441 bayes_pls_golite062009
  • glucosidase activity
    		•  0.766503513427695 bayes_pls_golite062009
  • hexosaminidase activity
    		•  0.763360027922833 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.687079660016821 bayes_pls_golite062009
  • sugar binding
    		•  0.52048704356718 bayes_pls_golite062009
  • chitinase activity
    		•  0.500233744020165 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.498330151821515 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  0.266938437560648 bayes_pls_golite062009
  • beta-N-acetylhexosaminidase activity
    		•  0.263065978664289 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  0.0325030313870961 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  0.0325030313870961 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle