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View Structure Prediction Details

Protein: gi|24373068, gi|...
Organism: Shewanella oneidensis MR-1
Length: 746 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373068, gi|....

Description E-value Query
Range		 Subject
Range
GLGB_ACTSZ - 1,4-alpha-glucan branching enzyme GlgB OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=...
 616.0 [0..5] [742..1]
GLGB_PSESM - 1,4-alpha-glucan branching enzyme GlgB OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=glgB PE...
GLGB_PSESM - 1,4-alpha-glucan-branching enzyme OS=Pseudomonas syringae pv. tomato GN=glgB PE=3 SV=1
 612.0 [0..7] [737..13]
GLGB_PSEPF - 1,4-alpha-glucan branching enzyme GlgB OS=Pseudomonas fluorescens (strain Pf0-1) GN=glgB PE=3 SV=1
 611.0 [0..3] [736..11]
gi|68545998, gi|... - gi|68545998|ref|ZP_00585547.1| 1,4-alpha-glucan branching enzyme [Shewanella amazonensis SB2B], gi|6...
 609.0 [0..7] [745..10]
GLGB_THEEB - 1,4-alpha-glucan branching enzyme GlgB OS=Thermosynechococcus elongatus (strain BP-1) GN=glgB PE=3 S...
GLGB_SYNEL - 1,4-alpha-glucan-branching enzyme OS=Synechococcus elongatus GN=glgB PE=3 SV=1
 605.0 [0..8] [745..2]
gi|48765635 - ref|ZP_00270185.1| COG0296: 1,4-alpha-glucan branching enzyme [Rhodospirillum rubrum]
GLGB_RHORT - 1,4-alpha-glucan branching enzyme GlgB OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM...
 605.0 [0..11] [742..7]
GLGB_CHESB - 1,4-alpha-glucan branching enzyme GlgB OS=Chelativorans sp. (strain BNC1) GN=glgB PE=3 SV=1
 604.0 [0..1] [734..1]
GLGB_PSEF5 - 1,4-alpha-glucan branching enzyme GlgB OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gl...
 604.0 [0..5] [737..13]
GLGB_PSE14 - 1,4-alpha-glucan branching enzyme GlgB OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Ra...
 604.0 [0..7] [738..13]
gi|148511078, gi... - gi|82739821|ref|ZP_00902606.1| 1,4-alpha-glucan branching enzyme [Pseudomonas putida F1], gi|8271310...
 603.0 [0..11] [736..13]

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Predicted Domain #1
Region A:
Residues: [1-122] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTQAQTYFY DGSDVALLNG QYTDVFSLLG MHSINEGKAL VVRCFLRNAQ KVDVISLKDG  60
   61 RKVASLERVN EAGLFAGTLG RRIKPFLYAL RVTYPLCELD IIDPYQFGSL LNREDLYLFG 120
  121 EG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.41
Match: 1m7xA
Description: 1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [123-746] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSEQAYRFLG ANWRQVDNVE GVHFCVWAPN AKRVSVVGDF NHWDDTRHVM RQHVANGLWE  60
   61 IFLPGVVEGS HYKFDLVYQN GERHAKSDPM ATQMECAPHN ASIVPKKQQH QWADTQWMDK 120
  121 RAATAWHRAP MSIYEVQLGS WRRKGEFGEQ YFDYQDLIEQ LIPYVKEQGF THIELMPVSE 180
  181 YPFDGSWGYQ PVGLYAPTYR FGDANGFKAF IDACHQAEIG VLLDWVAAHF PKDPHGLVRF 240
  241 DGTCLYEHED PRKGTHPDWD TLIYNYGRGE VRSFLLSNAC YWLREFHLDG LRLDAVSSML 300
  301 YLDYSREPGQ WLPNAYGGRE NLEAIDFLQM LNQRLYQAIP GICMIAEEST AFAGVTKPTD 360
  361 SSGLGFGFKW NMGWMNDSLS YLGRDPIYRQ YHHNQLTFSL MYAYSEQFML SISHDEVVHG 420
  421 KGSLLHKIPG DDWQKFATLR AYYGFMWGHP GKKLLFMGSE FAQRDEWDHD HSLDWHLLAF 480
  481 EPHQGVQRWL RDLNQLYRQF PALSVLDYEP QGFRWLDCDN GRDSIFSFVR YGEGNDVPLV 540
  541 FVVNMTPTVH QGFRIGLPQG GDFCEYLNSD SYLYGGSNQG NGGKIIAQAL PWQGMASSAL 600
  601 ITVPPLGCLI LGPATENILR ESAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 138.0
Match: 1m7xA
Description: 1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.81707419439683 bayes_pls_golite062009
protein binding 1.40303524581236 bayes_pls_golite062009
phosphorylase activity 0.99159540154441 bayes_pls_golite062009
glucosidase activity 0.766503513427695 bayes_pls_golite062009
hexosaminidase activity 0.763360027922833 bayes_pls_golite062009
cation transmembrane transporter activity 0.687079660016821 bayes_pls_golite062009
sugar binding 0.52048704356718 bayes_pls_golite062009
chitinase activity 0.500233744020165 bayes_pls_golite062009
ion transmembrane transporter activity 0.498330151821515 bayes_pls_golite062009
transferase activity, transferring hexosyl groups 0.266938437560648 bayes_pls_golite062009
beta-N-acetylhexosaminidase activity 0.263065978664289 bayes_pls_golite062009
ligand-gated ion channel activity 0.0325030313870961 bayes_pls_golite062009
ligand-gated channel activity 0.0325030313870961 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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