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Protein Overview: gi|24373035, gi|...

General Information:
Name(s) found: gi|24373035 [NCBI NR]
gi|24347206 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373035|ref|NP_717077.1| type I restriction-modification system, S subunit, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347206|gb|AAN54522.1|AE015591_1 type I restriction-modification system, S subunit, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: Type I site-specific deoxyribonuclease complex [TASLink to PubMed article]
    Biological Process: DNA restriction-modification system [TASLink to PubMed article]
    DNA modification [TASLink to PubMed article]
    Molecular Function: DNA binding [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGAKEAKKI IDDCLLPKKE LKDFLVNRAK GAFHAGREGR VWVKEERYGV PFMGSVDIIQ  60
   61 ANLDRLPLIS KEQVSRKPLF KVFKDWVLIT RSGTIGRMTL ARQEMDGHAC SEHVMRVVPN 120
  121 PEKVSPGYLY CYLRSKFGVP LVVSSTYGAI IQHIEPHHVI NLPVPIVDKQ LEEKAHELIN 180
  181 KCGDNRTESN ALLKKAGQLI NEHFSFPNKL ALSHRIFTHS AASSSLVQKR MDATYHDRVA 240
  241 QMSDDLVEQA GAEKTLAELG VNTGESGRMK LVFTESDHGV PFTTSGEIFR ARYEPQRFLA 300
  301 KSKLGDVADW GVRQEDILLA RSGQVGGIIG TGVWADSRFE NAAVSVDVIR IKAQESEVLP 360
  361 GYLYAYLMCT DVGYRQLIRS AAGSSIPHLS SDDVLKLKLP RMGTAEEKAV HELVQKAGEL 420
  421 AAEAQKLEDE AVKMVEDAIE AAAPKH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..446] PSI-BLAST 54.39794 Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  1.4210145112553 bayes_pls_golite062009
  • DNA binding
    		•  1.41179209561821 bayes_pls_golite062009
  • binding
    		•  1.33040179592624 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.80284978967783 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.63913609426399 bayes_pls_golite062009
  • catalytic activity
    		•  0.316629025709297 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle