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Protein Overview: gi|24347166, gi|...

General Information:
Name(s) found: gi|24373007 [NCBI NR]
gi|24347166 [NCBI NR]
Description(s) found:
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  • gi|24373007|ref|NP_717049.1| anaerobic dimethyl sulfoxide reductase, A subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347166|gb|AAN54494.1|AE015587_3 anaerobic dimethyl sulfoxide reductase, A subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • anaerobic dimethyl sulfoxide reductase, A subunit [Shewanella oneidensis MR-1]gi|24347166|gb|AAN54494.1| anaerobic dimethyl sulfoxide reductase, A subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • anaerobic dimethyl sulfoxide reductase, A subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 836 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    Molecular Function: dimethyl sulfoxide reductase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERRSFLKMS AAMGCAATVT GCNSGSSDVN VVPPKPPVGD EVQTWSSCLV NCGSNCPIKV  60
   61 FSRDGIITRI ETDHETNDEY GNHQIRACAR GRSLRSRTYA PDRLRTPMKR VGKRGEAKFV 120
  121 PISWDEAAST IASEIQRIAS SYGNKSILKH YGTGAYYGFA SSACFDRVLN LNGGFLKIYG 180
  181 NYSWAQQNEA AAATGFASTS GSSLTALYDS DLFLGIGYNP SEMRQSGSGE GYDFLKALEA 240
  241 NANLEVIMVD PRYTDSMAGK ESQWLPIRPG TDAAFAEAIA YEMISSGWVD THSKAFLDKY 300
  301 CVGFDKASLE KLVAEFTASG DPKKTQYLPY IDVEDNYRNY ILGEGKFADN GPRTPAWAAK 360
  361 ICGISEANIK SVASKIMNAK APFIVTGAGV NRHANGEQAM RACYMLSFLT GKVGQPGVSN 420
  421 GALPYQGSLN RAGMSGGSNP VKESISFFTW AEAIERGHEM TARKDGIRGT ADLDTPLGAD 480
  481 IKAVFAINSN ALINQHSDCN GTAKILEDDT KCELIVVCDC WMTASARYAD ILLPDTTWLE 540
  541 SNDLVNDSYA SGIMGYLVAM KAAVKPMWES ISMFEMGRLI AAKMGKEAEY TEGKDEAAWL 600
  601 EELYQKTRTN SANTDAQPAF PNSYAEAQKI GVFRAFSKTP VLALDSYING GKAVSTPSGK 660
  661 VEIYSLSMAQ KGKDWIFNPN VKGDYITAIP MYQPTWEGYD DEDTKDDYPL QLMGYHTKGR 720
  721 THSSYHNVPW LREAAEDAVW MNPADALGRG LRGGDKVQMW NDRGTVELPV RITPRVAPGV 780
  781 VALGQGAWYQ PDIARIGRSG HPIDVGGCIN TLTRYQPSPF AKGNPQHTNR VQIVKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..836] PSI-BLAST 137.0 Dimethylsulfoxide reductase (DMSO reductase)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • formate dehydrogenase activity
    		•  12.8557183783781 bayes_pls_golite062009
  • trimethylamine-N-oxide reductase activity
    		•  8.75612712598998 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  7.57161550681607 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  7.16311737169172 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  6.81363258746891 bayes_pls_golite062009
  • oxidoreductase activity
    		•  6.1435623144578 bayes_pls_golite062009
  • metal cluster binding
    		•  5.7442724322527 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  5.7442724322527 bayes_pls_golite062009
  • molybdenum ion binding
    		•  3.31971125919934 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor
    		•  2.54554723799271 bayes_pls_golite062009
  • electron carrier activity
    		•  2.49660481239302 bayes_pls_golite062009
  • nitrate reductase activity
    		•  2.20600951698793 bayes_pls_golite062009
  • catalytic activity
    		•  1.93875927205186 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  1.29705810885029 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.27093915206504 bayes_pls_golite062009
  • oxidoreductase activity, acting on other nitrogenous compounds as donors
    		•  1.12492792673137 bayes_pls_golite062009
  • lyase activity
    		•  0.603656450860878 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.134493772161849 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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