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Protein Overview: gi|24347152, gi|...

General Information:
Name(s) found: gi|24372999 [NCBI NR]
gi|24347152 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372999|ref|NP_717041.1| fumarate reductase flavoprotein subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347152|gb|AAN54486.1|AE015585_7 fumarate reductase flavoprotein subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 589 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    tricarboxylic acid cycle [ISSLink to PubMed article]
    Molecular Function: succinate dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNTKLLPLA MSAFFISTFS YGQSLSEFHI DKGNNCQTCH TKPIKVDDAE NHENKSCESC  60
   61 HGTMGELAAK SKSKLSPHHS HLIDVSCTSC HSGHKQPVFV CQTCHDSFKN EFKIPFSNDK 120
  121 PVLDNYQFPE VTQEMIETAL AKAPLEQHQV IVIGAGAAGH AAAISARQHG VADVVILEKQ 180
  181 PYIGGNSMLA AGGMSAAETV TQALKHYPDS KALWYEDTMK GGHNINNPDL VKILTENGSA 240
  241 GVDWLQAMGA DLTSASSAGG HNAERLHRPT GGAKSGPEIV NTLKETAQKL GVETRTNSKV 300
  301 IQLVQNKQGV ITGVLVQGKH SKLHILGAKA VIIASGGFAR NNELVAKYRP DLKGVDATNN 360
  361 PGNVGDALTF APKVGADIVD VKEIQAFPTA AAGKMVISGT ARGAGAIMLN NDGERFCDEM 420
  421 GPRDKVSECI WAQKGKDAWL VFDETVLDRL GQLRGMLDLG IIFKGNSADE MAKATKMNAQ 480
  481 KFDQAIKRYN DFKVKGKDAD FARKNMADDL QYPIYAVKIK PAVHHTMGGL KINTKTEVID 540
  541 QNGLPIKGLF AAGEVTGGVH GANRLAGNAI ADTIVFGRIA GEQVANSIK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..589] PSI-BLAST 96.69897 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain; Flavocytochrome c3 (respiratory fumarate reductase)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • L-aspartate oxidase activity
    		•  7.97437641217089 bayes_pls_golite062009
  • aspartate oxidase activity
    		•  7.32727957948448 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
    		•  5.00880700655468 bayes_pls_golite062009
  • succinate dehydrogenase activity
    		•  4.85506290418994 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor
    		•  4.3382494647592 bayes_pls_golite062009
  • succinate dehydrogenase (ubiquinone) activity
    		•  4.3382494647592 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  3.66002057624971 bayes_pls_golite062009
  • oxidoreductase activity
    		•  3.25470541847124 bayes_pls_golite062009
  • electron carrier activity
    		•  2.8553929424231 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  2.78793325009909 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  2.26549080531565 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  2.11247286526577 bayes_pls_golite062009
  • dihydrolipoyl dehydrogenase activity
    		•  1.91979117253135 bayes_pls_golite062009
  • catalytic activity
    		•  1.75556359035561 bayes_pls_golite062009
  • oxidoreductase activity, acting on other nitrogenous compounds as donors
    		•  1.68706267261293 bayes_pls_golite062009
  • binding
    		•  1.41440014472974 bayes_pls_golite062009
  • oxygen-dependent protoporphyrinogen oxidase activity
    		•  1.39701083369255 bayes_pls_golite062009
  • nitrate reductase activity
    		•  0.80169943324397 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors
    		•  0.798505263716232 bayes_pls_golite062009
  • fumarate reductase (NADH) activity
    		•  0.65260793370113 bayes_pls_golite062009
  • FAD binding
    		•  0.503028015880333 bayes_pls_golite062009
  • succinate-CoA ligase activity
    		•  0.468246082354334 bayes_pls_golite062009
  • coenzyme binding
    		•  0.44036421821989 bayes_pls_golite062009
  • protein binding
    		•  0.159209309982354 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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