YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347152, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	589 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347152, gi|....

Description	E-value	Query Range	Subject Range
FRD2_SHEFN - Fumarate reductase flavoprotein subunit OS=Shewanella frigidimarina (strain NCIMB 400) GN=ifcA PE=1 ... FRD2_SHEFR - (Q9Z4P0) Fumarate reductase flavoprotein subunit precursor (EC 1.3.99.1) (Iron(III)-induced flavocyt...	359.0	[0..7]	[588..3]
gi\|11514095, gi\|... - gi\|11514095\|pdb\|1QO8\|D Chain D, The Structure Of The Open Conformation Of A Flavocytochrome C3 Fumar...	352.0	[0..27]	[588..7]
gi\|117921756, gi... - gi\|78684661\|ref\|ZP_00849444.1\| Flavocytochrome c [Shewanella sp. ANA-3], gi\|78507598\|gb\|EAP21108.1\| ...	351.0	[0..3]	[589..8]
SO0970 - fumarate reductase flavoprotein subunit precursor FRDA_SHEON - Fumarate reductase flavoprotein subunit OS=Shewanella oneidensis (strain MR-1) GN=SO_0970 PE=1 SV=2	350.0	[0..3]	[589..8]
gi\|120600061, gi... - gi\|82740511\|ref\|ZP_00903250.1\| Flavocytochrome c [Shewanella sp. W3-18-1], gi\|82722115\|gb\|EAP56942.1... gi\|145563699, gi... - gi\|77813106\|ref\|ZP_00812387.1\| Flavocytochrome c [Shewanella putrefaciens CN-32], gi\|77811941\|gb\|EAO...	350.0	[0..3]	[589..8]
gi\|78511804, gi\|... - gi\|78688804\|ref\|ZP_00853471.1\| Flavocytochrome c [Shewanella sp. MR-7], gi\|78511804\|gb\|EAP25159.1\| F...	349.0	[0..3]	[589..8]
gi\|82406927, gi\|... - gi\|82495091\|ref\|ZP_00880669.1\| Flavocytochrome c [Shewanella sp. MR-4], gi\|82406927\|gb\|EAP47589.1\| F...	349.0	[0..3]	[589..8]
gi\|113947331, gi... - gi\|160876734\|ref\|YP_001556050.1\| flavocytochrome c [Shewanella baltica OS195], gi\|160862256\|gb\|ABX50... gi\|68520872, gi\|... - gi\|68541417\|ref\|ZP_00581161.1\| Flavocytochrome c [Shewanella baltica OS155], gi\|68520872\|gb\|EAN44372... gi\|153002014, gi... - gi\|153002014\|ref\|YP_001367695.1\| flavocytochrome c [Shewanella baltica OS185], gi\|151366632\|gb\|ABS09... gi\|217499724, gi... - gi\|217974589\|ref\|YP_002359340.1\| flavocytochrome c [Shewanella baltica OS223], gi\|217499724\|gb\|ACK47...	344.0	[0..3]	[589..8]
gi\|127514040, gi... - gi\|78366634\|ref\|ZP_00836912.1\| Flavocytochrome c [Shewanella sp. PV-4], gi\|78361209\|gb\|EAP03035.1\| F...	337.0	[0..6]	[589..10]

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Predicted Domain #1

Region A:
Residues: [1-589]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNTKLLPLA MSAFFISTFS YGQSLSEFHI DKGNNCQTCH TKPIKVDDAE NHENKSCESC  60
   61 HGTMGELAAK SKSKLSPHHS HLIDVSCTSC HSGHKQPVFV CQTCHDSFKN EFKIPFSNDK 120
  121 PVLDNYQFPE VTQEMIETAL AKAPLEQHQV IVIGAGAAGH AAAISARQHG VADVVILEKQ 180
  181 PYIGGNSMLA AGGMSAAETV TQALKHYPDS KALWYEDTMK GGHNINNPDL VKILTENGSA 240
  241 GVDWLQAMGA DLTSASSAGG HNAERLHRPT GGAKSGPEIV NTLKETAQKL GVETRTNSKV 300
  301 IQLVQNKQGV ITGVLVQGKH SKLHILGAKA VIIASGGFAR NNELVAKYRP DLKGVDATNN 360
  361 PGNVGDALTF APKVGADIVD VKEIQAFPTA AAGKMVISGT ARGAGAIMLN NDGERFCDEM 420
  421 GPRDKVSECI WAQKGKDAWL VFDETVLDRL GQLRGMLDLG IIFKGNSADE MAKATKMNAQ 480
  481 KFDQAIKRYN DFKVKGKDAD FARKNMADDL QYPIYAVKIK PAVHHTMGGL KINTKTEVID 540
  541 QNGLPIKGLF AAGEVTGGVH GANRLAGNAI ADTIVFGRIA GEQVANSIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.69897
Match:	1qo8A
Description:	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain; Flavocytochrome c3 (respiratory fumarate reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
L-aspartate oxidase activity	7.97437641217089	bayes_pls_golite062009
aspartate oxidase activity	7.32727957948448	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	5.00880700655468	bayes_pls_golite062009
succinate dehydrogenase activity	4.85506290418994	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	4.3382494647592	bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity	4.3382494647592	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	3.66002057624971	bayes_pls_golite062009
oxidoreductase activity	3.25470541847124	bayes_pls_golite062009
electron carrier activity	2.8553929424231	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	2.78793325009909	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.11247286526577	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.91979117253135	bayes_pls_golite062009
catalytic activity	1.75556359035561	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	1.68706267261293	bayes_pls_golite062009
binding	1.41440014472974	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	1.39701083369255	bayes_pls_golite062009
nitrate reductase activity	0.80169943324397	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.798505263716232	bayes_pls_golite062009
fumarate reductase (NADH) activity	0.65260793370113	bayes_pls_golite062009
FAD binding	0.503028015880333	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
coenzyme binding	0.44036421821989	bayes_pls_golite062009
protein binding	0.159209309982354	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: