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Protein Overview: SYY_SHEON

General Information:
Name(s) found: SYY_SHEON [Swiss-Prot]
Description(s) found:
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  • gi|24372893|ref|NP_716935.1| tyrosyl-tRNA synthetase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347014|gb|AAN54380.1|AE015575_6 tyrosyl-tRNA synthetase [Shewanella oneidensis MR-1] [NCBI NR]
  • Tyrosine--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=tyrS PE=3 SV=1 [Swiss-Prot]
  • tyrosyl-tRNA synthetase [Shewanella oneidensis MR-1]gi|24347014|gb|AAN54380.1| tyrosyl-tRNA synthetase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • tyrosyl-tRNA synthetase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 398 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tyrosyl-tRNA aminoacylation [ISSLink to PubMed article]
    Molecular Function: tyrosine-tRNA ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLDQVLAE IRRGTDEILL ESDLLEKLKK GRPLRIKLGA DPTAPDIHLG HTVILNKLRL  60
   61 FQELGHEVIF LIGDFTGMVG DPSGKNSTRP PLTREQVLAN AETYKEQVYK ILDPAKTRIE 120
  121 FNSSWLEPLG AAGMIRLASQ QTVARMMERD DFKKRYASGQ SIAIHEFMYP LLQGYDSVAL 180
  181 KADVELGGTD QKFNLLMGRE LQKAEGQKPQ AVIMMPLLEG LDGVKKMSKS AHNYIGVSEP 240
  241 ANEMFGKIMS ISDELMWRYF ELLSFRPLAE IEQFKQDIAN GANPRDTKIS LAKEIIARFH 300
  301 DAAAAESAHQ AFIDRFQKGA IPDDIPEVEL AAGEGLAIAN LLKDADLVGS TSDALRMIKQ 360
  361 GAVKMDGEKI DDSRMTLSAG TVAVFQVGKR KFAKVTLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..398] PSI-BLAST 88.522879 Tyrosyl-tRNA synthetase (TyrRS); Tyrosyl-trna synthetase (TyrRS), C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  6.18775771640881 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  4.38130670432475 bayes_pls_golite062009
  • structural molecule activity
    		•  4.02543122782129 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.50161401062914 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.926923419656671 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • binding
    		•  0.803280718980961 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle