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Protein Overview: gi|24346836, gi|...

General Information:
Name(s) found: gi|24372761 [NCBI NR]
gi|24346836 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372761|ref|NP_716803.1| magnesium and cobalt efflux protein CorC [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346836|gb|AAN54248.1|AE015561_8 magnesium and cobalt efflux protein CorC [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 291 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cobalt ion transport [ISSLink to PubMed article]
    magnesium ion transport [ISSLink to PubMed article]
    Molecular Function: cobalt ion transmembrane transporter activity [ISSLink to PubMed article]
    magnesium ion transmembrane transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDIPPSTN AQKKSWFDRV SQLFQGEPQN REDLVDVIDG AEQRELISED TREMIKGVLE  60
   61 VSDMRVRDIM IPRAQIVAIQ IDNTVEELLR TVIGSGHSRF PVVNEDKDHI EGILLAKDLI 120
  121 PYGFSNSEEP FSLDRVIRPA VVVPESKRVD VLLKEFRSQR YHMAIVVDEY GGVSGLVTIE 180
  181 DILEEIVGEI EDEFDHDSPE DTEIRKVGNT VYMVKALTPI EDFNEEFNTH FSDEEFDTVG 240
  241 GLVSHAFGHL PERNESIMIE GIEFKVINAD TRRLIQLRVK LPDHNIGEDV E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..291] PSI-BLAST 27.69897 Inosine monophosphate dehydrogenase (IMPDH); Type II inosine monophosphate dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • magnesium ion transmembrane transporter activity
    		•  5.02895256941344 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.30714747153741 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.05832395284653 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  1.77666157413171 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.5512605628205 bayes_pls_golite062009
  • di-, tri-valent inorganic cation transmembrane transporter activity
    		•  1.46421916456482 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  1.11928485686295 bayes_pls_golite062009
  • transporter activity
    		•  0.666337333933876 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.534933550137003 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.26029124809786 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  0.0796146522242194 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle