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Protein Overview: gi|24346805, gi|...

General Information:
Name(s) found: gi|24372736 [NCBI NR]
gi|24346805 [NCBI NR]
Description(s) found:
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  • gi|24372736|ref|NP_716778.1| exonuclease, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346805|gb|AAN54223.1|AE015559_7 exonuclease, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • exonuclease, putative [Shewanella oneidensis MR-1]gi|24346805|gb|AAN54223.1| exonuclease, putative [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • exonuclease, putative [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: intracellular [ISSLink to PubMed article]
    Biological Process: DNA catabolic process [ISSLink to PubMed article]
    Molecular Function: 3'-5' exonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAAGSQYLA SLLEPQAGDL SSPESQLKFA WFQQKLALTT RLTDAELTLL PVLSLESRHV  60
   61 ELVTPEYLAT ALQQLSRESV LGFDTETRAS FEPSVQHPLS LVQLATADTC YLFQQAVLGD 120
  121 AFAQLKPLLE NEQILKVGIG LRGDGQALKR DWNILVSPRL DLNWAMAQLG AGKEMGTRQL 180
  181 VAVLLHQRID KPKKITLSNW QQVPLSPAQI QYAALDALAA NHCFWQLIEK LRGFYGKTSA 240
  241 ENKSLLPTNL AARLASYFNP C

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..261] PSI-BLAST 38.69897 No description for 2hbjA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  2.44407485797253 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.42289896976347 bayes_pls_golite062009
  • hydrolase activity
    		•  2.41899414621161 bayes_pls_golite062009
  • exonuclease activity
    		•  2.2254764376369 bayes_pls_golite062009
  • nuclease activity
    		•  2.16485349595693 bayes_pls_golite062009
  • endonuclease activity
    		•  2.14862853024281 bayes_pls_golite062009
  • catalytic activity
    		•  1.25233849524628 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.17567646585446 bayes_pls_golite062009
  • endoribonuclease activity
    		•  1.13158139596857 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.10429096602931 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.993287337157856 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.873229204410164 bayes_pls_golite062009
  • ribonuclease H activity
    		•  0.869940880547909 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.717600245625866 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.568273228950698 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.42966661555123 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  0.263114072096431 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.245820194716261 bayes_pls_golite062009
  • binding
    		•  0.122249780594036 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.115254148049348 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle