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Protein Overview: gi|24346606, gi|...

General Information:
Name(s) found: gi|24372585 [NCBI NR]
gi|24346606 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372585|ref|NP_716627.1| D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346606|gb|AAN54072.1|AE015544_5 D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 321 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISYLLGSF ILVCSSLTVA ATAHSADSAS VTTKSTATKA TTPKKAHTKQ EVAANSALVV  60
   61 DLKTNEILYS SNPDAVRPIA SVTKLMTAMV TLDAKLPMDE KLTINIKDTK EMRGVYSRVR 120
  121 IGSEISRKEM LLLTLMSSEN RAAASLAHHY PGGHKAFIKA MNAKAKALGM KNSRFVEPTG 180
  181 LSAKNVSSAR DLVVLLKASQ GYPMLGQLSS TEKKTVTFGK PKYSLDFRNT NRLVYKDNWD 240
  241 IHLTKTGFTN AAGHCLVMRT EMAKRKVAFV VLDAKGKYTH MADANRLRNW LETGKVTPIP 300
  301 ADAKQYKKQR SQQQLAKVSE T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..321] PSI-BLAST 61.30103 The crystal structure of wild type penicillin-binding protein 5 from E. coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.37745387761459 bayes_pls_golite062009
  • penicillin binding
    		•  3.16077730467133 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  3.02516915958448 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.98959517344587 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  2.34154596924818 bayes_pls_golite062009
  • catalytic activity
    		•  2.2253600206851 bayes_pls_golite062009
  • drug binding
    		•  2.00354593744547 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.66768404710194 bayes_pls_golite062009
  • peptidase activity
    		•  0.0621279448114327 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle