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Protein Overview: gi|24372451, gi|...

General Information:
Name(s) found: gi|24372451 [NCBI NR]
gi|24346434 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372451|ref|NP_716493.1| D-3-phosphoglycerate dehydrogenase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346434|gb|AAN53938.1|AE015531_4 D-3-phosphoglycerate dehydrogenase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 409 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: L-serine biosynthetic process [ISSLink to PubMed article]
    Molecular Function: phosphoglycerate dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHSLDKDK IKILLLEGVH QSAVDVFERA GYTNIEYHKA SLGDEALHES IKDAHFIGIR  60
   61 SRTQLSADVL KRAEKLIAIG CFCIGTNQVD LATAESLGIP VFNAPFSNTR SVAELVLGEI 120
  121 IMLMRGIPER NAIAHRGGWM KTAAGSYEVR GKTLGVIGYG HIGTQLGILA ETLGMRVVFF 180
  181 DIEDKLPLGN AQQIHSMEQL LAQADVVSLH VPETPQTKDM ISTAEFAAMR KGSIFINASR 240
  241 GTVVDIDALT VALKERHLAG AAIDVFPVEP QSNDDEFISP LRGLDNVLLT PHVGGSTAEA 300
  301 QENIGIEVAG KLAKYSDNGS TVSAVNFPEV SLPMHKGTSR LLHIHQNRPG VLIKINKAFS 360
  361 EKGINIAAQY LQTTAEIGYV VMEVDTHQAE EALVELKAID GTLRTRVLF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..409] PSI-BLAST 107.0 The active form of phosphoglycerate dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • acetolactate synthase activity
    		•  3.48670706716817 bayes_pls_golite062009
  • transferase activity, transferring aldehyde or ketonic groups
    		•  2.1980358206838 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  1.68027744358887 bayes_pls_golite062009
  • binding
    		•  1.52779917836084 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.00070756595263 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.9367410227151 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  0.839863523675468 bayes_pls_golite062009
  • catalytic activity
    		•  0.645256181736122 bayes_pls_golite062009
  • phosphoglycerate dehydrogenase activity
    		•  0.639509916626856 bayes_pls_golite062009
  • transferase activity
    		•  0.576589833246962 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.437542400722334 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  0.418775403210681 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.32207755075663 bayes_pls_golite062009
  • protein binding
    		•  0.219210115869644 bayes_pls_golite062009
  • DNA binding
    		•  0.142173841090723 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle