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Protein Overview: gi|24346372, gi|...

General Information:
Name(s) found: gi|24372406 [NCBI NR]
gi|24346372 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372406|ref|NP_716448.1| transcriptional activator protein MetR [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346372|gb|AAN53893.1|AE015526_4 transcriptional activator protein MetR [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: methionine biosynthetic process [ISSLink to PubMed article]
    regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    Molecular Function: transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIELRHLRTL MALKESGSLA GAAKKRFVTQ SALSHQIKEL EQRINSPIFV RKSKPLSFTQ  60
   61 EGARLLHLAE EILPKVLETE TDLKNGLETD TNQLRVGIEC HSCFRWLMPV MEQFRQDHPQ 120
  121 AELDLSSRHL FDSLNALEMG ELDIVLTSDP VPGHSLAYQH LFDFEVKLVV AKDHPLAKEA 180
  181 YVTPKQLSRL PIISYPVPLA RLDIYRHFLE PAGIEAGEQK TCDLTMMLLQ RIACKDGIAA 240
  241 LPNWSINEGH GLSLAAVKLG QEGLKRPLFG AYRRHSANSA LVQNWLQLVA SEGLTRQQKS 300
  301 N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..301] PSI-BLAST 49.69897 COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.06846313752146 bayes_pls_golite062009
  • transcription factor activity
    		•  1.54776226622667 bayes_pls_golite062009
  • DNA binding
    		•  1.53867658911479 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.45471488657915 bayes_pls_golite062009
  • binding
    		•  1.29220115989941 bayes_pls_golite062009
  • catalytic activity
    		•  1.04475291968158 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle