YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346372, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346372, gi|....

Description	E-value	Query Range	Subject Range
gi\|91191158, gi\|... - gi\|91224247\|ref\|ZP_01259510.1\| putative transcription regulator protein [Vibrio alginolyticus 12G01]...	266.0	[0..1]	[298..1]
gi\|116185384, gi... - gi\|75856032\|ref\|ZP_00763668.1\| COG0583: Transcriptional regulator [Vibrio sp. Ex25], gi\|254227935\|re...	264.0	[0..1]	[298..1]
gi\|28900071, gi\|... - gi\|28900071\|ref\|NP_799726.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD ... gi\|28808354 - gi\|28808354\|dbj\|BAC61559.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2...	264.0	[0..1]	[298..1]
gi\|114045851, gi... - gi\|78689367\|ref\|ZP_00854030.1\| transcriptional regulator, LysR family [Shewanella sp. MR-7], gi\|7851...	261.0	[0..1]	[295..1]
gi\|117614564, gi... - gi\|78685922\|ref\|ZP_00850696.1\| transcriptional regulator, LysR family [Shewanella sp. ANA-3], gi\|785...	259.0	[0..1]	[295..1]
gi\|89209186, gi\|... - gi\|89209186\|ref\|ZP_01187638.1\| regulatory protein, LysR:LysR, substrate-binding [Bacillus weihenstep...	257.0	[0..2]	[297..9]
gi\|27367995, gi\|... - gi\|27367995\|ref\|NP_763522.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359568\|gb\|AAO...	257.0	[0..4]	[298..5]
gi\|82406257, gi\|... - gi\|82495665\|ref\|ZP_00881239.1\| transcriptional regulator, LysR family [Shewanella sp. MR-4], gi\|8240...	256.0	[0..1]	[294..1]
gi\|37200667, gi\|... - gi\|37676126\|ref\|NP_936522.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200667\|dbj\|BA...	256.0	[0..4]	[298..5]
gi\|228901018, gi... - gi\|228901018\|ref\|ZP_04065229.1\| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222], g... gi\|218541706, gi... - gi\|218897372\|ref\|YP_002445783.1\| transcriptional regulator, LysR family [Bacillus cereus G9842], gi\|... gi\|228965395, gi... - gi\|228965395\|ref\|ZP_04126485.1\| Transcriptional regulator, LysR [Bacillus thuringiensis serovar sott... gi\|74491626, gi\|... - gi\|75760891\|ref\|ZP_00740903.1\| Transcriptional regulators, LysR family [Bacillus thuringiensis serov...	255.0	[0..2]	[297..4]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIELRHLRTL MALKESGSLA GAAKKRFVTQ SALSHQIKEL EQRINSPIFV RKSKPLSFTQ  60
   61 EGARLLHLAE EILPKVLETE TDLKNGLETD TNQLRVGIEC HSCFRWLMPV MEQFRQDHPQ 120
  121 AELDLSSRHL FDSLNALEMG ELDIVLTSDP VPGHSLAYQH LFDFEVKLVV AKDHPLAKEA 180
  181 YVTPKQLSRL PIISYPVPLA RLDIYRHFLE PAGIEAGEQK TCDLTMMLLQ RIACKDGIAA 240
  241 LPNWSINEGH GLSLAAVKLG QEGLKRPLFG AYRRHSANSA LVQNWLQLVA SEGLTRQQKS 300
  301 N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	1al3A
Description:	COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.06846313752146	bayes_pls_golite062009
transcription factor activity	1.54776226622667	bayes_pls_golite062009
DNA binding	1.53867658911479	bayes_pls_golite062009
nucleic acid binding	1.45471488657915	bayes_pls_golite062009
binding	1.29220115989941	bayes_pls_golite062009
catalytic activity	1.04475291968158	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: