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Protein Overview: gi|24372234, gi|...

General Information:
Name(s) found: gi|24372234 [NCBI NR]
gi|24346155 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24372234|ref|NP_716276.1| transposase, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346155|gb|AAN53721.1|AE015511_4 transposase, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 715 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transposition, DNA-mediated [ISSLink to PubMed article]
    Molecular Function: transposase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKAWFSPQE LLQLPGMPTT VQGIRFKAKT ESWESRKKEG SKGFEYHLGS LPPITQAHLR  60
   61 QQAVKNTTSR EVAAARQLIA TPASQLVKKT ELQQQFLTLP KAKQQVAMER QLLLNDMANF 120
  121 IAPFVEAGRR TEGVMVFAKQ CNQSKATLYR WQKAYDEKGL MGLVDTRGGA QVSVMEDQKD 180
  181 LQQFLIALVT GKPHLLEKYK VQQQEAQKKA AEHGWIVPSI GSIRRWISRW HSDNIAAFTA 240
  241 LTNPDAYNNS HRPLYGTMYP WLSGPNQVWE FDSTPTDVML NAHGKLRRYA VVAAIDVYTR 300
  301 RPMVLVTPTS NAEGICLLLR RCLLNWGMLE ADGVARTDNG SDYVSLRVSG IFDILGIDQS 360
  361 RTRPFSGWEK PYIERFFGTL SRALFELLPA YIGHNVSDRQ QIESAKAFAQ RIGGKNKAAN 420
  421 KEEALSVAMT PEALQKMIDD WIQYDYMHQV HEGFKGALKG KTPFTVMSES AYVANRIANP 480
  481 HALDLLLNHV GDATVIRGSV SAGNIRYTAP ELQESLWDRK RVRVFLDPSD VGRATLYALD 540
  541 NWQQCVDAVN LDLIGRDIDP AAFRKARNED KKVLASFRRA ARELQEKFGI DTLAAEGLAK 600
  601 AAAERGSLTS FTPKPTTTDN PALAALAQAS SDSDQQLASL SHQAQAISAA AQRVNQNHAT 660
  661 VMRTEHEKAE ELTLATLERE LSEREKLWLK EYRLKYRMFA ARLDRQLEET KKAAK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..168] PSI-BLAST 33.522879 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase
    2 View Details [169..515] PSI-BLAST 55.69897 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    3 View Details [516..591] FFAS03 1.75 mu transposase, C-terminal domain; mu transposase, core domain
    4 View Details [592..715] MSA 3.144995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nuclease activity
    		•  1.81796593394339 bayes_pls_golite062009
  • exonuclease activity
    		•  1.64964907710028 bayes_pls_golite062009
  • catalytic activity
    		•  1.62277843225829 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.58702937619673 bayes_pls_golite062009
  • hydrolase activity
    		•  1.41857676124086 bayes_pls_golite062009
  • transposase activity
    		•  1.09803761537443 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.71352601607444 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.63299586096139 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.62821439153618 bayes_pls_golite062009
  • endonuclease activity
    		•  0.150927275899469 bayes_pls_golite062009
    2
    Term Confidence Notes
  • nuclease activity
    		•  1.81796593394339 bayes_pls_golite062009
  • exonuclease activity
    		•  1.64964907710028 bayes_pls_golite062009
  • catalytic activity
    		•  1.62277843225829 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.58702937619673 bayes_pls_golite062009
  • hydrolase activity
    		•  1.41857676124086 bayes_pls_golite062009
  • transposase activity
    		•  1.09803761537443 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.71352601607444 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.63299586096139 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.62821439153618 bayes_pls_golite062009
  • endonuclease activity
    		•  0.150927275899469 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle