| Protein: | gi|24372234, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 715 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372234, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
357.0 | [0..6] | [501..529] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MNKAWFSPQE LLQLPGMPTT VQGIRFKAKT ESWESRKKEG SKGFEYHLGS LPPITQAHLR 60
61 QQAVKNTTSR EVAAARQLIA TPASQLVKKT ELQQQFLTLP KAKQQVAMER QLLLNDMANF 120
121 IAPFVEAGRR TEGVMVFAKQ CNQSKATLYR WQKAYDEKGL MGLVDTRG
|
| Detection Method: |  |
| Confidence: | 33.522879 |
| Match: | 1jkhA |
| Description: | HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nuclease activity | 1.81796593394339 | bayes_pls_golite062009 |
| exonuclease activity | 1.64964907710028 | bayes_pls_golite062009 |
| catalytic activity | 1.62277843225829 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.58702937619673 | bayes_pls_golite062009 |
| hydrolase activity | 1.41857676124086 | bayes_pls_golite062009 |
| transposase activity | 1.09803761537443 | bayes_pls_golite062009 |
| ribonuclease activity | 0.71352601607444 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 0.63299586096139 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.62821439153618 | bayes_pls_golite062009 |
| endonuclease activity | 0.150927275899469 | bayes_pls_golite062009 |
|
Region A: Residues: [169-515] |
1 11 21 31 41 51
| | | | | |
1 GAQVSVMEDQ KDLQQFLIAL VTGKPHLLEK YKVQQQEAQK KAAEHGWIVP SIGSIRRWIS 60
61 RWHSDNIAAF TALTNPDAYN NSHRPLYGTM YPWLSGPNQV WEFDSTPTDV MLNAHGKLRR 120
121 YAVVAAIDVY TRRPMVLVTP TSNAEGICLL LRRCLLNWGM LEADGVARTD NGSDYVSLRV 180
181 SGIFDILGID QSRTRPFSGW EKPYIERFFG TLSRALFELL PAYIGHNVSD RQQIESAKAF 240
241 AQRIGGKNKA ANKEEALSVA MTPEALQKMI DDWIQYDYMH QVHEGFKGAL KGKTPFTVMS 300
301 ESAYVANRIA NPHALDLLLN HVGDATVIRG SVSAGNIRYT APELQES
|
| Detection Method: | |
| Confidence: | 55.69897 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nuclease activity | 1.81796593394339 | bayes_pls_golite062009 |
| exonuclease activity | 1.64964907710028 | bayes_pls_golite062009 |
| catalytic activity | 1.62277843225829 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.58702937619673 | bayes_pls_golite062009 |
| hydrolase activity | 1.41857676124086 | bayes_pls_golite062009 |
| transposase activity | 1.09803761537443 | bayes_pls_golite062009 |
| ribonuclease activity | 0.71352601607444 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 0.63299586096139 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.62821439153618 | bayes_pls_golite062009 |
| endonuclease activity | 0.150927275899469 | bayes_pls_golite062009 |
|
Region A: Residues: [516-591] |
1 11 21 31 41 51
| | | | | |
1 LWDRKRVRVF LDPSDVGRAT LYALDNWQQC VDAVNLDLIG RDIDPAAFRK ARNEDKKVLA 60
61 SFRRAARELQ EKFGID
|
| Detection Method: | |
| Confidence: | 1.75 |
| Match: | 1bcmA |
| Description: | mu transposase, C-terminal domain; mu transposase, core domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [592-715] |
1 11 21 31 41 51
| | | | | |
1 TLAAEGLAKA AAERGSLTSF TPKPTTTDNP ALAALAQASS DSDQQLASLS HQAQAISAAA 60
61 QRVNQNHATV MRTEHEKAEE LTLATLEREL SEREKLWLKE YRLKYRMFAA RLDRQLEETK 120
121 KAAK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
