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Protein Overview: gi|24346142, gi|...

General Information:
Name(s) found: gi|24372224 [NCBI NR]
gi|24346142 [NCBI NR]
Description(s) found:
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  • gi|24372224|ref|NP_716266.1| penicillin-binding protein 1B [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346142|gb|AAN53711.1|AE015510_4 penicillin-binding protein 1B [Shewanella oneidensis MR-1] [NCBI NR]
  • penicillin-binding protein 1B [Shewanella oneidensis MR-1]gi|24346142|gb|AAN53711.1| penicillin-binding protein 1B [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • penicillin-binding protein 1B [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 768 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTHTTKKAP AQRKAKRSRG LFGHIWSLTW KLALIGLAVV TFYGIYLDQI IARKFEGQKW  60
   61 HLPAQVFSRS MALYPGAAVS HPQLMAELKL LGYRKVANPR EVGEFSASST KIELWRRPFL 120
  121 HPEGDQPEQR VMITFDSEGV SAIARMEDKR QLAVFHLEPV LLDRMITGDG EDRLFVSTEE 180
  181 MPKPIVQALL LVEDRSFYEH HGVNPFAILR AAFVNITAGR TVQGGSTLTQ QLAKNFFLSS 240
  241 ERSLLRKVRE ALMAVIIDFR YSKDEILEAY LNEVYMGQDK SRAVHGMGLA SQFYFGRPIG 300
  301 ELTTAQQAFL VAAIKGPSYY NPWRYPERSL ERRDLVLRLL MESGELNTAQ YKVAVESPLG 360
  361 LRNANKPVHQ KLPSFYALVK QEVNQRYGDA LLKQSGVKIY TTLDPMAQEA AEIAVTQTFK 420
  421 SLDKGNKSLQ IGMVVTDKYT GGIAAMVGDK TPGFDGYNRA VEIRRPIGSL IKPFVYATAL 480
  481 APNSQFTLAS PLKDQPITLK NEQGKTWSPQ NFDKTFSGQV SLLTALKKSM NVPTVNLGIA 540
  541 VGVDAVVTTL AKSGWEEPLN EYPSMLLGAV NGSPLMVAQV YQTLADSGAY RKLTTVTAVL 600
  601 DSDNQPLPVT RSAKEQAITP DTDFLVQYAM QQVVRSGTAT RLGNAFPGVA LAGKTGTSND 660
  661 SRDSWFAGFD ERNVAAIWVG RDDNGKTSLY GSSGAMAVYQ AFLKERPPIG LRSIPPSGVI 720
  721 KGYFDRDTGE AKEAGCSNTE ALPALRGTYN PAKNCGEPLQ WWQKILGQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..161] PSI-BLAST 28.0 Crystal structure of the DNA repair protein UvrB point mutant Y96A revealing a novel fold for domain 2
    2 View Details [162..768] PSI-BLAST 103.0 No description for 2oluA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.37745387761459 bayes_pls_golite062009
  • penicillin binding
    		•  3.16077730467133 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  3.02516915958448 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.98959517344587 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  2.34154596924818 bayes_pls_golite062009
  • catalytic activity
    		•  2.2253600206851 bayes_pls_golite062009
  • drug binding
    		•  2.00354593744547 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.66768404710194 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  1.16054683174437 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.07226857049823 bayes_pls_golite062009
  • peptidase activity
    		•  0.0621279448114327 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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