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Protein Overview: gi|24345958, gi|...

General Information:
Name(s) found: gi|24372077 [NCBI NR]
gi|24345958 [NCBI NR]
Description(s) found:
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  • gi|24372077|ref|NP_716119.1| formate-dependent nitrite reductase, nrfC protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345958|gb|AAN53564.1|AE015496_8 formate-dependent nitrite reductase, nrfC protein [Shewanella oneidensis MR-1] [NCBI NR]
  • formate-dependent nitrite reductase, nrfC protein [Shewanella oneidensis MR-1]gi|24345958|gb|AAN53564.1| formate-dependent nitrite reductase, nrfC protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • formate-dependent nitrite reductase, nrfC protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 235 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nitrogen compound metabolic process [ISSLink to PubMed article]
    Molecular Function: nitrite reductase (NO-forming) activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENIERRRF LKSAGMCSLI LTPLAGCSVK EDADSAHKPH YVMVFDQNKC VGCGDCKTAC  60
   61 NQANNLPAGV SRVILEQQSG RVEGQACPHC GKMVCDCERK FVRVSCQQCK NAPCVTVCPT 120
  121 GAAHRDAKTG IVTMDASKCA GCKYCIGACP YNARLINNNT DVADNCDFCL HSKLSKGELP 180
  181 ACVQSCKYDA LIFGDANDPQ SYVSKLLAVK DSVRIKPQFG TEPSLRYIPI VKLGV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..235] PSI-BLAST 32.39794 Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • formate dehydrogenase activity
    		•  10.9674358961972 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  7.27554333181693 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  6.49651154487804 bayes_pls_golite062009
  • metal cluster binding
    		•  6.49651154487804 bayes_pls_golite062009
  • oxidoreductase activity
    		•  5.98361135786786 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  5.77927347135001 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  5.39747453448396 bayes_pls_golite062009
  • electron carrier activity
    		•  5.05393703018095 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  3.13953145151561 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  2.76338281383262 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  2.70037803782769 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  2.09041948600744 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  1.80621486978907 bayes_pls_golite062009
  • catalytic activity
    		•  0.488483980994331 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle