YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345958, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345958, gi|....

Description	E-value	Query Range	Subject Range
gi\|91188720, gi\|... - gi\|91227192\|ref\|ZP_01261651.1\| nitrite reductase, Fe-S protein (NrfC) [Vibrio alginolyticus 12G01], ...	168.0	[0..3]	[235..1]
gi\|37198180, gi\|... - gi\|37679436\|ref\|NP_934045.1\| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio vulni...	168.0	[0..2]	[235..37]
gi\|75854130, gi\|... - gi\|75854130\|ref\|ZP_00761844.1\| COG0437: Fe-S-cluster-containing hydrogenase components 1 [Vibrio sp....	168.0	[0..3]	[235..1]
gi\|148655927, gi... - gi\|148655927\|ref\|YP_001276132.1\| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ro...	167.0	[0..38]	[228..1]
gi\|68512319, gi\|... - gi\|68561487\|ref\|ZP_00600782.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	167.0	[0..38]	[233..1]
gi\|90413331, gi\|... - gi\|90413331\|ref\|ZP_01221325.1\| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium profu...	167.0	[0..3]	[235..1]
gi\|28806919 - gi\|28806919\|dbj\|BAC60190.1\| nitrite reductase, Fe-S protein (NrfC) [Vibrio parahaemolyticus RIMD 221... gi\|28898701, gi\|... - gi\|28898701\|ref\|NP_798306.1\| nitrite reductase, Fe-S protein (NrfC) [Vibrio parahaemolyticus RIMD 22... gi\|153840172, gi... - gi\|153840172\|ref\|ZP_01992839.1\| cytochrome c nitrite reductase, Fe-S protein [Vibrio parahaemolyticu...	166.0	[0..3]	[235..1]
gi\|27366302, gi\|... - gi\|27366302\|ref\|NP_761830.1\| Fe-S-cluster-containing hydrogenase component 1 [Vibrio vulnificus CMCP...	166.0	[0..3]	[235..1]
gi\|54308453, gi\|... - gi\|54308453\|ref\|YP_129473.1\| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium profund...	165.0	[0..3]	[235..1]
gi\|76164515, gi\|... - gi\|76260598\|ref\|ZP_00768231.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	165.0	[0..38]	[232..1]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENIERRRF LKSAGMCSLI LTPLAGCSVK EDADSAHKPH YVMVFDQNKC VGCGDCKTAC  60
   61 NQANNLPAGV SRVILEQQSG RVEGQACPHC GKMVCDCERK FVRVSCQQCK NAPCVTVCPT 120
  121 GAAHRDAKTG IVTMDASKCA GCKYCIGACP YNARLINNNT DVADNCDFCL HSKLSKGELP 180
  181 ACVQSCKYDA LIFGDANDPQ SYVSKLLAVK DSVRIKPQFG TEPSLRYIPI VKLGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1kqfB
Description:	Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	10.9674358961972	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	7.27554333181693	bayes_pls_golite062009
iron-sulfur cluster binding	6.49651154487804	bayes_pls_golite062009
metal cluster binding	6.49651154487804	bayes_pls_golite062009
oxidoreductase activity	5.98361135786786	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.77927347135001	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	5.39747453448396	bayes_pls_golite062009
electron carrier activity	5.05393703018095	bayes_pls_golite062009
NADH dehydrogenase activity	3.13953145151561	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	2.76338281383262	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	2.70037803782769	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	2.09041948600744	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.80621486978907	bayes_pls_golite062009
catalytic activity	0.488483980994331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: