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Protein Overview: gi|24345896, gi|...

General Information:
Name(s) found: gi|24372027 [NCBI NR]
gi|24345896 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24372027|ref|NP_716069.1| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345896|gb|AAN53514.1|AE015492_1 aconitate hydratase 2 [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 865 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tricarboxylic acid cycle [ISSLink to PubMed article]
    Molecular Function: aconitate hydratase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEAYRKHVA ERAAEGVVPK PLDAHQVAEL VKLVQNPPAG EEAFVLDLLE NRIPPGVDEA  60
   61 AYVKAAFLDA VAKGTATSPI LSAERATELL GTMQGGYNIE PLIAQLDNPA LAPLAAKALA 120
  121 HTLLMFDSFH DVVEKMEAGN QFAKQVVEAW ANADWYLSRP KLADKVTLTV FKVSGETNTD 180
  181 DLSPAPDAWS RPDIPLHALA MLKNARDGIE PDVAGSVGPI KKLEELKTKG FPLVYVGDVV 240
  241 GTGSSRKSAT NSVLWFMGDD IPFVPNKRAG GFCLGGKIAP IFFNTMEDAG ALPIELDVSK 300
  301 MEMGDVIDIY PYAGVVKRHG SDEVISEFSL KTDVLLDEVR AGGRIPLIIG RGLTDKARAV 360
  361 LGLPASEVFV RPQDIADNGK GYTLAQKMVG KACGVAGVRP GQYCEPKMTS VGSQDTTGPM 420
  421 TRDELKDLAC LGFSADLTMQ SFCHTAAYPK PVDVNTHHTL PDFIMNRGGV SLRPGDGVIH 480
  481 SWLNRMLLPD TVGTGGDSHT RFPIGISFPA GSGLVAFAAA TGVMPLDMPE SVLVRFKGKM 540
  541 QPGITLRDLV HAIPLKAIEL GMLTVEKKGK VNIFSGRVLE IEGLESLKVE QAFELSDASA 600
  601 ERSAAGCTIK LDKEPIIEYL NSNITMLKWM IAEGYGDRRT IERRIKGMEE WLANPELMSA 660
  661 DADAEYTAVI EIDLNEIKEP ILCAPNDPDD AVLLSSVAQT KIDEVFVGSC MTNIGHFRAT 720
  721 GKMLDKFAKT LPTRLWIAPP TKMDKDQLTE EGYYGIFGRV GARIEIPGCS LCMGNQARVA 780
  781 EGATVVSTST RNFPNRLGTG ANVYLASAEL AAVAALLGRL PTVEEYQEYA KELDATAADT 840
  841 YRYLNFDQID SYTKKASQVI FQSAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..865] PSI-BLAST 1000.0 Aconitase B, N-terminal domain; Aconitase B, second N-terminal domain; Aconitase B, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3-isopropylmalate dehydratase activity
    		•  11.6597692115322 bayes_pls_golite062009
  • aconitate hydratase activity
    		•  4.71920913892019 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.93956285477489 bayes_pls_golite062009
  • catalytic activity
    		•  2.4040324437254 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  2.08349115784849 bayes_pls_golite062009
  • hydro-lyase activity
    		•  2.04845291489052 bayes_pls_golite062009
  • lyase activity
    		•  2.0080619912194 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.38665120581594 bayes_pls_golite062009
  • binding
    		•  1.03925793375799 bayes_pls_golite062009
  • structural molecule activity
    		•  0.870913754566634 bayes_pls_golite062009
  • DNA binding
    		•  0.682819555450327 bayes_pls_golite062009
  • mRNA binding
    		•  0.52321922280827 bayes_pls_golite062009
  • RNA binding
    		•  0.41480744631042 bayes_pls_golite062009
  • protein binding
    		•  0.232638130896339 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle