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Protein Overview: gi|24372001, gi|...

General Information:
Name(s) found: gi|24372001 [NCBI NR]
gi|24345862 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372001|ref|NP_716043.1| transcription termination factor Rho [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345862|gb|AAN53488.1|AE015489_1 transcription termination factor Rho [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription termination [ISSLink to PubMed article]
    Molecular Function: transcription termination factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLTELKDTP ISDLVSLAEN MKLENMARAR KQDIIFSILK AHAKSGEDIF GGGVLEILQD  60
   61 GFGFLRSADG SYLAGPDDIY VSPSQIRRFN MRTGDTIFGK IRPPKEGERY FALLKVNEVN 120
  121 FDKPENSRNK ILFENLTPLH AEERMRMERG NGSTEDITAR ILDLCSPIGK GQRGLIVAPP 180
  181 KAGKTLLLQN IAQSITYNNP EVVLMVLLID ERPEEVTEMQ RLVKGEVIAS TFDEPASRHV 240
  241 QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD ANALHRPKRF 300
  301 FGAARNIENG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN QELHLSRKAA EKRVFPAIDF 360
  361 NRSGTRREEK LTNPDELQKM WILRKILNPM DEVSAMEFLI DKLAMTKTND EFFTAMKRAK 420
  421 S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..421] PSI-BLAST 152.0 Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; Transcription termination factor Rho, ATPase domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.52864900707835 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.46620917553746 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.991157380393447 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.834867065912847 bayes_pls_golite062009
  • DNA binding
    		•  0.686733725554901 bayes_pls_golite062009
  • protein binding
    		•  0.378225828131122 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle