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Protein Overview: gi|24371978, gi|...

General Information:
Name(s) found: gi|24371978 [NCBI NR]
gi|24345830 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24371978|ref|NP_716020.1| type I restriction-modification system, S subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345830|gb|AAN53465.1|AE015486_6 type I restriction-modification system, S subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 439 amino acids

    Gene Ontology:
    Cellular Component: Type I site-specific deoxyribonuclease complex [ISSLink to PubMed article]
    Biological Process: DNA restriction-modification system [ISSLink to PubMed article]
    DNA modification [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSILSPFG KIPNDWEYQI IIDNVEFLTG PAFDSSLFNT ESRGARLVRG INLTQGSTRW  60
   61 GEDKTKYWDV ELNNLKKYQL AINDILIGMD GSLVGKNYAY LKQSDLPALL VQRVARLRAK 120
  121 SNLHSKYLYY MYATDFWLDY VEVVKTNSGI PHISNGDIKN FRFPFPPLPE QQKIAAILTS 180
  181 VDEVIEKTQA QIDKLKDLKS GMMQELLTKG VGIKQGDKYV PHIEFKDSPV GKIPKSWEVK 240
  241 PLNSVVLKII DCEHKTAPYV DKSEYLVVRT SNVRHGELVL DDMKYTHADG YAEWTNRAIP 300
  301 SLGDVLFTRE APAGESCLVP ENTKVCMGQR MVLLRPDANV IFSNFFSLFL TSEAASCAIY 360
  361 ERSIGTTVSR INIEDIKRIP CIVPPLSEQQ EISKAIQSVQ NSILNKQEKL QSLKNLKKAL 420
  421 MQDLLTGKVR VKVDNDLVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..439] PSI-BLAST 64.69897 Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  1.4210145112553 bayes_pls_golite062009
  • DNA binding
    		•  1.41179209561821 bayes_pls_golite062009
  • binding
    		•  1.33040179592624 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.80284978967783 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.63913609426399 bayes_pls_golite062009
  • catalytic activity
    		•  0.316629025709297 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle