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Protein Overview: gi|24345701, gi|...

General Information:
Name(s) found: gi|24371878 [NCBI NR]
gi|24345701 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24371878|ref|NP_715920.1| penicillin-binding protein 1A [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345701|gb|AAN53365.1|AE015476_6 penicillin-binding protein 1A [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 839 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLKRIVIA LFSLALLGVG AIVAAYFYVL PDLPDVSTLK NVQLQTPLRI YSSDGKLISQ  60
   61 FGEKRRIPLK LEEVPKPLLQ AFLATEDARF YEHGGIDPVG VMRAATVMLT TGEKKQGAST 120
  121 ITMQVARNFF LTRDKTIIRK VKEIFISYHI EQLLTKDEIL ELYVNRIYLG QRAYGVGAAA 180
  181 QVYFGKNVQD LTLSEMSMIA GLPKAPSTLN PITSPSRALA RRNVVLMRMN EVGYISKAEY 240
  241 QAALQEPLVA KYHGAEIDLY APYISEMARD YMVQKYGEEE AYTNGYNVYT TISSDLQLLA 300
  301 QQALRNNVYA YDERHGYRGP AAALWTGAKP DNAQIQAELA KVTPVQELQP AAVLSVEGQQ 360
  361 ASVLTAKGET KVIKWDGLKW ARKFINDKRQ GAVPKSASEI LTVGERIWIR DNGQHLQLSQ 420
  421 VPEVASATVS LDPENGAIRT LVGGYSFSQS QYNRVTQAKR QLGSNIKPFI YAAALEKGFT 480
  481 LATLINNAPI NKPDISQGTA WRPKNSPDIY GGPTRLRVGL AQSINVMSVR AMRHIGLDAA 540
  541 IAELTKFGFD PNDLPRNESL ALGSPSVTPL QVATAFNVFA NGGFLVEPFY IERVEDSFGN 600
  601 VIEKANPTLA CKSNNSHVQP SSDPMSFGEP TAQTDAAVAH CFEQTGRYAP QIISEQTAFL 660
  661 ITEALKSVIW GGGDWSKGTG WQGTAWRAAQ LIKRHDIAGK TGTTNESRDT WFSGFGPTLT 720
  721 STFWVGFDDH GRQLGRTAWN ANGEKDQITG TEAGAKTAGP GWNEFMNNVL KGVPETTAIP 780
  781 PEGIVSVRID LATGKLTRKT DYTSAFEYFI SGTEPKEYIS ETQDENNLFI DAPADDLFQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..195] PSI-BLAST 66.0 No description for 2oqoA was found.
    2 View Details [196..687] PSI-BLAST 40.39794 Penicillin binding protein 2a (PBP2A), N-terminal domain; Penicillin binding protein 2a (PBP2A), middle domain; Penicillin binding protein 2a (PBP2A), C-terminal domain
    3 View Details [688..839] PSI-BLAST 47.522879 PENICILLIN-BINDING PROTEIN 1A (PBP-1A) ACYL-ENZYME COMPLEX ( CEFOTAXIME) FROM STREPTOCOCCUS PNEUMONIAE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • drug binding
    		•  3.43867028493374 bayes_pls_golite062009
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.12650314537616 bayes_pls_golite062009
  • penicillin binding
    		•  2.89507018520983 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  2.70174066798582 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.69091897402517 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
    		•  2.14702453234629 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  1.96547160092829 bayes_pls_golite062009
  • catalytic activity
    		•  1.85492008367309 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.44522375970439 bayes_pls_golite062009
  • binding
    		•  1.11566650386305 bayes_pls_golite062009
  • peptidase activity
    		•  0.376767771035659 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.163657050466595 bayes_pls_golite062009
  • protein binding
    		•  0.0666688846338231 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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