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Protein Overview: gi|24345435, gi|...

General Information:
Name(s) found: gi|24371667 [NCBI NR]
gi|24345435 [NCBI NR]
Description(s) found:
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  • gi|24371667|ref|NP_715709.1| penicillin-binding protein 1C, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345435|gb|AAN53154.1|AE015458_7 penicillin-binding protein 1C, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • penicillin-binding protein 1C, putative [Shewanella oneidensis MR-1]gi|24345435|gb|AAN53154.1| penicillin-binding protein 1C, putative [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • penicillin-binding protein 1C, putative [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 760 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVYLAIVA LAVILLGLRL WPAQPLSQLM PSSREVLAAD GSLLRLTLAS DGQYRLWQDL  60
   61 EDISPTMIQV MLLKEDRYFY YHLGVNPVAL VRATFATYVD GDRQGGSTLT MQLVRRVYEI 120
  121 NSRSVLGKLE QILAAFWLEA RYSKRELLEA YLNLAPMGGN IEGVGAASQI YFHKVAGELS 180
  181 LSEALSLAVM PQSPARRARF QADFQAARDR LALFWQQTYP DDPRNQGLQV LTALGAERNE 240
  241 LPFKAPHFAR RQLRQDARIV HTTIEPKLQA LLELRIRQYI TSKRHLGVNN ATALLIDTRD 300
  301 QAIKAWVGSA DFFNPMIYGQ VDGVTARRSP GSTLKPFLYA LGLDQGIIHP QSILKDAPMA 360
  361 FGSFEPENFD HRFTGPISAR DALIKSRNLP AVWLAGQLTD PNLYGFLRQA QIFGLRQESH 420
  421 YGLALALGGG ELTMMELGRL YLMLASEGRY YPLRERTEQP INPPSMQLLS PAASFLVLDM 480
  481 LKDNPRADGL PRQGWRVAWK TGTSWGFHDA WSAGVAGPYV LVVWVGNFDA TPNAAFIGAE 540
  541 IAGPLFFNIT DALQASLPST ADRIWAPPNT VKKVNICAES GELPNLWCPK VIEGWFIPGV 600
  601 SPVKVSTLHR PVWVDNQTGM AVCPPYDAQT QHQEIFAFWP SDMASLFEQA GLPRKLAPQL 660
  661 PESCRNAIQL SNIDPVIRSP LKNVTYSLRQ SHLHEHIALL ADAAPDASML YWFVGRDLIG 720
  721 QSLPKQALEW RPSTSGDYKL SVTDDKGRST SLNLNVSILH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..567] PSI-BLAST 98.154902 No description for 2oluA was found.
    2 View Details [568..656] PSI-BLAST 9.154902 No description for 2z2lC was found.
    3 View Details [657..760] FFAS03 1.8 Crystal structure of the human BTLA-HVEM complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  3.77507319667289 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  3.4039757547751 bayes_pls_golite062009
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.12650314537616 bayes_pls_golite062009
  • penicillin binding
    		•  2.89507018520983 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  2.70174066798582 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.69091897402517 bayes_pls_golite062009
  • drug binding
    		•  2.27792716125407 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  1.96547160092829 bayes_pls_golite062009
  • catalytic activity
    		•  1.85492008367309 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.44522375970439 bayes_pls_golite062009
  • binding
    		•  0.967786931456022 bayes_pls_golite062009
  • peptidase activity
    		•  0.88898857866944 bayes_pls_golite062009
  • hydrolase activity
    		•  0.852674113261898 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.710917280650211 bayes_pls_golite062009
  • chitinase activity
    		•  0.42465610730229 bayes_pls_golite062009
  • protein binding
    		•  0.274057433888583 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.27173620923431 bayes_pls_golite062009
  • protein binding
    		•  1.31579477754421 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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