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Protein Overview: SNF12_YEAST

General Information:
Name(s) found: SNF12_YEAST [Swiss-Prot]
Description(s) found:
  • Transcription regulatory protein SNF12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF12 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 566 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVMKPSNG KGSRKSSKAA TPDTKNFFHA KKKDPVNQDK ANNASQITPT VPHSHPSDMV  60
   61 IPDHLAELIP ELYSFQQLVD SEKRLDHFIH LRNLHMKRMV AQWERSKLSQ EFLYPHLNFP 120
  121 NVKFLRIFIS NVSENQPWQM DTNNEADLMA LENATWTMRI EGRLLDNVQA NDPAREKFSS 180
  181 FIESIVVDFK NKENDNVPST KFNAAPEENA TEGPSDKKLN LNLPLQFSLP NGDNSTTTNT 240
  241 DQNNATMGEE TAKKDMSSTT PKLESVKWQY DPNNPVDFDG LDIKRVGSEN VECTISILRK 300
  301 SSPEEPFMSY SPQLTAIIGL KSGTSHDAIF SIYKYIHLNE LLTNDESAFE NLMGNRNNHN 360
  361 SNTSTSKMLD AASSQVSIVK LDTQLITLLP SSLKESSPDT MKLTDLLSLI NSTHLLPLQP 420
  421 IEIDYTVRVD KASTYGELVL DIEVPDVNAL KFNNTQRESQ IGAAELNENA RELEQIKPKI 480
  481 ALQDKEITSV LSNLHESNKR YRFFKKISED PVKALNECIA STSNALKVLS GDEGYNEDMV 540
  541 RRANFYKENE AMLRENIEVI LSNGRM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..204] MSA 1.012974 View MSA. No confident structure predictions are available.
    2 View Details [205..263] deduced N/A No confident structure predictions are available.
    3 View Details [264..566] MSA 5.016935 View MSA. No confident structure predictions are available.
    4 View Details [305..450] PSI-BLAST 22.0 Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
    5 View Details [451..566] MSA 1.039978 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  4.01592136607858 bayes_pls_golite062009
  • basal transcription repressor activity
    		•  3.09418413549897 bayes_pls_golite062009
  • binding
    		•  2.67987108623459 bayes_pls_golite062009
  • transcription coactivator activity
    		•  2.58234407051051 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.32480271621458 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.98538788872171 bayes_pls_golite062009
  • transcription activator activity
    		•  1.83085389017135 bayes_pls_golite062009
  • transcription factor binding
    		•  1.73032563380905 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.60414428986898 bayes_pls_golite062009
  • protein binding
    		•  1.58138506346812 bayes_pls_golite062009
  • structural molecule activity
    		•  1.28917299936669 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.06026105710513 bayes_pls_golite062009
  • catalytic activity
    		•  0.121624777548864 bayes_pls_golite062009
    4
    Term Confidence Notes
  • transcription regulator activity
    		•  4.01592136607858 bayes_pls_golite062009
  • basal transcription repressor activity
    		•  3.09418413549897 bayes_pls_golite062009
  • binding
    		•  2.67987108623459 bayes_pls_golite062009
  • transcription coactivator activity
    		•  2.58234407051051 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.32480271621458 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.98538788872171 bayes_pls_golite062009
  • transcription activator activity
    		•  1.83085389017135 bayes_pls_golite062009
  • transcription factor binding
    		•  1.73032563380905 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.60414428986898 bayes_pls_golite062009
  • protein binding
    		•  1.58138506346812 bayes_pls_golite062009
  • structural molecule activity
    		•  1.28917299936669 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.06026105710513 bayes_pls_golite062009
  • catalytic activity
    		•  0.121624777548864 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle