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Protein Overview: RSC30_YEAST

General Information:
Name(s) found: RSC30_YEAST [Swiss-Prot]
Description(s) found:
  • Chromatin structure-remodeling complex protein RSC30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC30 PE=1 SV=2 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 883 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDMQVRKVR KPPACTQCRK RKIGCDRAKP ICGNCVKYNK PDCFYPDGPG KMVAVPSASG  60
   61 MSTHGNGQGS NHFSQGNGVN QKNVMIQTQY PIMQTSIEAF NFSFNPSVDT AMQWTKAASY 120
  121 QNNNTNNNTA PRQNSSTVSS NVHGNTIVRS DSPDVPSMDQ IREYNTRLQL VNAQSFDYTD 180
  181 NPYSFNVGIN QDSAVFDLMT SPFTQEEVLI KEIDFLKNKL LDLQSLQLKS LKEKSNLNAD 240
  241 NTTANKINKT GENSKKGKVD GKRAGFDHQT SRTSQSSQKY FTALTITDVQ SLVQVKPLKD 300
  301 TPNYLFTKNF IIFRDHYLFK FYNILHDICH INQFKVSPPN NKNHQQYMEV CKVNFPPKAI 360
  361 IIETLNSESL NNLNIEEFLP IFDKTLLLEF VHNSFPNGDT CPSFSTVDLP LSQLTKLGEL 420
  421 TVLLLLLNDS MTLFNKQAIN NHVSALMNNL RLIRSQITLI NLEYYDQETI KFIAITKFYE 480
  481 SLYMHDDHKS SLDEDLSCLL SFQIKDFKLF HFLKKMYYSR HSLLGQSSFM VPAAENLSPI 540
  541 PASIDTNDIP LIANDLKLLE TQAKLINILQ GVPFYLPVNL TKIESLLETL TMGVSNTVDL 600
  601 YFHDNEVRKE WKDTLNFINT IVYTNFFLFV QNESSLSMAV QHSSNNNKTS NSERCAKDLM 660
  661 KIISNMHIFY SITFNFIFPI KSIKSFSSGN NRFHSNGKEF LFANHFIEIL QNFIAITFAI 720
  721 FQRCEVILYD EFYKNLSNEE INVQLLLIHD KILEILKKIE IIVSFLRDEM NSNGSFKSIK 780
  781 GFNKVLNLIK YMLRFSKKKQ NFARNSDNNN VTDYSQSAKN KNVLLKFPVS ELNRIYLKFK 840
  841 EISDFLMERE VVQRSIIIDK DLESDNLGIT TANFNDFYDA FYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] PSI-BLAST 6.09691 PPR1
    2 View Details [93..342] deduced N/A No confident structure predictions are available.
    3 View Details [343..539] deduced N/A No confident structure predictions are available.
    4 View Details [540..600] deduced N/A No confident structure predictions are available.
    5 View Details [601..883] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.56444258780502 bayes_pls_golite062009
  • DNA binding
    		•  4.26146437716972 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.17369933547911 bayes_pls_golite062009
  • transcription factor activity
    		•  3.049435548132 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.93914501897006 bayes_pls_golite062009
  • binding
    		•  2.91929847152301 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  2.44382866473054 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.87955444697212 bayes_pls_golite062009
  • transcription activator activity
    		•  0.915626626047549 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle