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Protein Overview: PUF3_YEAST

General Information:
Name(s) found: PUF3_YEAST [Swiss-Prot]
Description(s) found:
  • mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF3 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 879 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMNMDMDMD MELASIVSSL SALSHSNNNG GQAAAAGIVN GGAAGSQQIG GFRRSSFTTA  60
   61 NEVDSEILLL HGSSESSPIF KKTALSVGTA PPFSTNSKKF FGNGGNYYQY RSTDTASLSS 120
  121 ASYNNYHTHH TAANLGKNNK VNHLLGQYSA SIAGPVYYNG NDNNNSGGEG FFEKFGKSLI 180
  181 DGTRELESQD RPDAVNTQSQ FISKSVSNAS LDTQNTFEQN VESDKNFNKL NRNTTNSGSL 240
  241 YHSSSNSGSS ASLESENAHY PKRNIWNVAN TPVFRPSNNP AAVGATNVAL PNQQDGPANN 300
  301 NFPPYMNGFP PNQFHQGPHY QNFPNYLIGS PSNFISQMIS VQIPANEDTE DSNGKKKKKA 360
  361 NRPSSVSSPS SPPNNSPFPF AYPNPMMFMP PPPLSAPQQQ QQQQQQQQQE DQQQQQQQEN 420
  421 PYIYYPTPNP IPVKMPKDEK TFKKRNNKNH PANNSNNANK QANPYLENSI PTKNTSKKNA 480
  481 SSKSNESTAN NHKSHSHSHP HSQSLQQQQQ TYHRSPLLEQ LRNSSSDKNS NSNMSLKDIF 540
  541 GHSLEFCKDQ HGSRFIQREL ATSPASEKEV IFNEIRDDAI ELSNDVFGNY VIQKFFEFGS 600
  601 KIQKNTLVDQ FKGNMKQLSL QMYACRVIQK ALEYIDSNQR IELVLELSDS VLQMIKDQNG 660
  661 NHVIQKAIET IPIEKLPFIL SSLTGHIYHL STHSYGCRVI QRLLEFGSSE DQESILNELK 720
  721 DFIPYLIQDQ YGNYVIQYVL QQDQFTNKEM VDIKQEIIET VANNVVEYSK HKFASNVVEK 780
  781 SILYGSKNQK DLIISKILPR DKNHALNLED DSPMILMIKD QFANYVIQKL VNVSEGEGKK 840
  841 LIVIAIRAYL DKLNKSNSLG NRHLASVEKL AALVENAEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] MSA 3.404997 View MSA. No confident structure predictions are available.
    2 View Details [148..513] ORFEUS 14.59 RBP1
    3 View Details [514..647] PSI-BLAST 973.9794 Pumilio 1
    4 View Details [648..746] PSI-BLAST 973.9794 Pumilio 1
    5 View Details [747..879] PSI-BLAST 973.9794 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • protein transporter activity
    		•  3.78867875686001 bayes_pls_golite062009
  • binding
    		•  2.48958374349477 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  2.31781486383479 bayes_pls_golite062009
  • RNA binding
    		•  2.11573661150436 bayes_pls_golite062009
  • transporter activity
    		•  2.07943941884833 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.94695201254013 bayes_pls_golite062009
  • protein binding
    		•  1.94427330399472 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.25530318108311 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.912298340413274 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.798034501840742 bayes_pls_golite062009
  • mRNA binding
    		•  0.73831124805124 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.464230801825493 bayes_pls_golite062009
  • DNA binding
    		•  0.356030945125909 bayes_pls_golite062009
  • hydrolase activity
    		•  0.251693850515235 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  0.184228011150913 bayes_pls_golite062009
  • signal sequence binding
    		•  0.14931345687137 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  0.144906281351729 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  0.128082902706083 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle