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Protein Overview: NRD1_YEAST

General Information:
Name(s) found: NRD1_YEAST [Swiss-Prot]
Description(s) found:
  • Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 575 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQDDDFQNF VATLESFKDL KSGISGSRIK KLTTYALDHI DIESKIISLI IDYSRLCPDS  60
   61 HKLGSLYIID SIGRAYLDET RSNSNSSSNK PGTCAHAINT LGEVIQELLS DAIAKSNQDH 120
  121 KEKIRMLLDI WDRSGLFQKS YLNAIRSKCF AMDISNNTAN TASQQLSLDP KQRSKQILSN 180
  181 LKKSPPLNLN ISLPTDLTST DPAKQQAALF QVIAALQKHF KTLPSHTSVG TVAPPQAHTI 240
  241 TEYGSRRERE RERERYNSRR NRSRSPPAPF SQPSTGRKDR YPSVAQDQYS IGAPNTTFGT 300
  301 NNHHLYPDEL NVSNNPHYRP KPVSYDSTLP PDHIKVYSRT LFIGGVPLNM KEWDLANVLK 360
  361 PFAEVQSVIL NNSRKHAFVK VYSRHEAENV LQNFNKDGAL PLRTRWGVGF GPRDCCDYQH 420
  421 GYSIIPMHRL TDADKKWSVS AQWGGTSGQP LVTGIVFEEP DIIVGEGVSS KAISQKMPTD 480
  481 SGRNGPRSGK PNKSGSISSI SPVPYGNAPL ASPPPQQYVQ PMMQQPYGYA PNQPLPSQGP 540
  541 AAAAPPVPQQ QFDPTAQLNS LMNMLNQQQQ QQQQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..200] MSA 6.475994 View MSA. No confident structure predictions are available.
    2 View Details [201..301] PSI-BLAST 52.69897 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    3 View Details [302..413] PSI-BLAST 52.69897 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    4 View Details [414..508] PSI-BLAST 36.69897 Hu antigen D (Hud)
    5 View Details [509..575] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  4.50398990564944 bayes_pls_golite062009
  • binding
    		•  4.16717332578111 bayes_pls_golite062009
  • RNA binding
    		•  2.92438188845619 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.18211199677674 bayes_pls_golite062009
  • mRNA binding
    		•  1.94495589345842 bayes_pls_golite062009
  • DNA binding
    		•  1.73925834998328 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.59667241219553 bayes_pls_golite062009
  • protein binding
    		•  1.32954276279597 bayes_pls_golite062009
  • transcription factor activity
    		•  0.873765500321315 bayes_pls_golite062009
    		• 0.84116054461637 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.632534695085793 bayes_pls_golite062009
  • hydrolase activity
    		•  0.520121701073354 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.294937517750882 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.100880394187931 bayes_pls_golite062009
    3
    Term Confidence Notes
  • nucleic acid binding
    		•  4.50398990564944 bayes_pls_golite062009
  • binding
    		•  4.16717332578111 bayes_pls_golite062009
  • RNA binding
    		•  2.92438188845619 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.18211199677674 bayes_pls_golite062009
  • mRNA binding
    		•  1.94495589345842 bayes_pls_golite062009
  • DNA binding
    		•  1.73925834998328 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.59667241219553 bayes_pls_golite062009
  • protein binding
    		•  1.32954276279597 bayes_pls_golite062009
  • transcription factor activity
    		•  0.873765500321315 bayes_pls_golite062009
    		• 0.84116054461637 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.632534695085793 bayes_pls_golite062009
  • hydrolase activity
    		•  0.520121701073354 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.294937517750882 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.100880394187931 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle