YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CA120_YEAST

General Information:
Name(s) found: CA120_YEAST [Swiss-Prot]
Description(s) found:
  • CCR4-NOT transcriptional complex subunit CAF120 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAF120 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 1060 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFSGDNKV VDSLASNPGL MSPSNFGGDF GSRLKVNVTS KKKLNDSSPT SPMESSPVSP  60
   61 ELVPILTLLN AHTHRRYHEG VFLILQDLNN NGTHAARKWK DVYGVLLGTQ LALWDAKELA 120
  121 EFTDPSCPVS EKKLKEVASK PTYINLTDAT LRTLDNSDNI VMECGKNLTN ALVVSTTLKN 180
  181 RYFLQFGNKE SFNAWNSAIR LCLYECSSLQ EAYTGAFISS RGAKLGDIRI LLTNRKYDYK 240
  241 DWVSVRFGAG MPWKRCYAVI SQSSSKKKGH FGEINLYEND KKVKKNHAMA TIVEAKALYA 300
  301 VYPSSPKLID SSTIIKVVGS VKFEKKESAQ EKDVFIMPEK HQAVPSYDTI IRFLIPAMDT 360
  361 FKLYGRPEKL LSSKNDPHSL LFGLPVLPHI YYLEVEDLLP LTNSVSSLHW SNNEWKEHIS 420
  421 DILQRKIAQG YCGCNSTSNI TSPLPSPFLG SADLFERADG VLSPKLSYGS KSSSNNSSKN 480
  481 SLPKRERVKL SSSSEQDLNN SDSPSIKRKS PPLVISESPH KVHTPTDASF RTRVTEGSPY 540
  541 AKQRHPKPFA SSVNDSPSDR AKSRTVPYNN NDRKATTPEK FERGETSCGK NVDESLEKVR 600
  601 NMKLEIPESN FDKFMTDKNL LSVDSKCSNE KKLSVESDLS AIYEKYSNGP FGHTEGLNGS 660
  661 SDETYLRFQR ASVHSESNYN SRKSFTPSDF SNGNEEEHAV LQELNSLTQR INELGMESIN 720
  721 SNSDSDRING SYSQVDFGNN NDEDDMNLFD PDFMAQDQLR AEERDYNKDD RTPLAKVPAA 780
  781 FQSTGLGITP DDDIERQYIT EHRSRHEVPK RSPEKPSNPL EIGNPYAKPG TRLNTTHTHS 840
  841 KTDRSITPQR GQPVPSGQQI SSYVQPANIN SPNKMYGANN SAMGSPRNPK TRAPPGPYNQ 900
  901 GWNNRPSPSN IYQRPHPSDT QPQAYHLPGN PYSTGNRPNM QAQYHPQQVP MPILQQPNRP 960
  961 YQPYAMNTHM GSPGGYAGAA PPFQPANVNY NTRPQQPWPT PNSPSAHYRP PPNLNQPQNG1020
 1021 SAGYYRPPAP QLQNSQARPQ KKDGFSQFMP SATTKNPYAQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..75] deduced N/A No confident structure predictions are available.
    2 View Details [76..232] Pfam 8.585027 PH domain No confident structure predictions are available.
    3 View Details [233..331] deduced N/A No confident structure predictions are available.
    4 View Details [332..1060] MSA 37.355997 View MSA. No confident structure predictions are available.
    5 View Details [792..865] MSA 1.250991 View MSA. No confident structure predictions are available.
    6 View Details [866..1060] MSA 5.247997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.16245771986829 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.13588211069605 bayes_pls_golite062009
  • protein binding
    		•  1.95763087285706 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.89560227697295 bayes_pls_golite062009
  • DNA binding
    		•  1.80618207914839 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.7376876470681 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.698266875418824 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle