| Protein: | CAF120 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1060 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF120.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1060] | [1..1060] |
|
|
2.0E-49 | [345..1057] | [132..854] |
|
|
2.0E-47 | [407..1019] | [762..1367] |
|
|
1.0E-46 | [386..1044] | [44..692] |
|
|
7.0E-46 | [506..1059] | [590..1124] |
|
|
2.0E-44 | [281..1056] | [53..830] |
|
|
6.0E-44 | [386..1059] | [107..782] |
|
|
1.0E-42 | [365..1059] | [41..747] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MRIFSGDNKV VDSLASNPGL MSPSNFGGDF GSRLKVNVTS KKKLNDSSPT SPMESSPVSP 60
61 ELVPILTLLN AHTHR
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 3.16245771986829 | bayes_pls_golite062009 |
| transcription regulator activity | 2.13588211069605 | bayes_pls_golite062009 |
| protein binding | 1.95763087285706 | bayes_pls_golite062009 |
| nucleic acid binding | 1.89560227697295 | bayes_pls_golite062009 |
| DNA binding | 1.80618207914839 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.7376876470681 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.698266875418824 | bayes_pls_golite062009 |
|
Region A: Residues: [76-232] |
1 11 21 31 41 51
| | | | | |
1 RYHEGVFLIL QDLNNNGTHA ARKWKDVYGV LLGTQLALWD AKELAEFTDP SCPVSEKKLK 60
61 EVASKPTYIN LTDATLRTLD NSDNIVMECG KNLTNALVVS TTLKNRYFLQ FGNKESFNAW 120
121 NSAIRLCLYE CSSLQEAYTG AFISSRGAKL GDIRILL
|
| Detection Method: | |
| Confidence: | 8.585027 |
| Match: | PF00169 |
| Description: | PH domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [233-331] |
1 11 21 31 41 51
| | | | | |
1 TNRKYDYKDW VSVRFGAGMP WKRCYAVISQ SSSKKKGHFG EINLYENDKK VKKNHAMATI 60
61 VEAKALYAVY PSSPKLIDSS TIIKVVGSVK FEKKESAQE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [332-1060] |
1 11 21 31 41 51
| | | | | |
1 KDVFIMPEKH QAVPSYDTII RFLIPAMDTF KLYGRPEKLL SSKNDPHSLL FGLPVLPHIY 60
61 YLEVEDLLPL TNSVSSLHWS NNEWKEHISD ILQRKIAQGY CGCNSTSNIT SPLPSPFLGS 120
121 ADLFERADGV LSPKLSYGSK SSSNNSSKNS LPKRERVKLS SSSEQDLNNS DSPSIKRKSP 180
181 PLVISESPHK VHTPTDASFR TRVTEGSPYA KQRHPKPFAS SVNDSPSDRA KSRTVPYNNN 240
241 DRKATTPEKF ERGETSCGKN VDESLEKVRN MKLEIPESNF DKFMTDKNLL SVDSKCSNEK 300
301 KLSVESDLSA IYEKYSNGPF GHTEGLNGSS DETYLRFQRA SVHSESNYNS RKSFTPSDFS 360
361 NGNEEEHAVL QELNSLTQRI NELGMESINS NSDSDRINGS YSQVDFGNNN DEDDMNLFDP 420
421 DFMAQDQLRA EERDYNKDDR TPLAKVPAAF QSTGLGITPD DDIERQYITE HRSRHEVPKR 480
481 SPEKPSNPLE IGNPYAKPGT RLNTTHTHSK TDRSITPQRG QPVPSGQQIS SYVQPANINS 540
541 PNKMYGANNS AMGSPRNPKT RAPPGPYNQG WNNRPSPSNI YQRPHPSDTQ PQAYHLPGNP 600
601 YSTGNRPNMQ AQYHPQQVPM PILQQPNRPY QPYAMNTHMG SPGGYAGAAP PFQPANVNYN 660
661 TRPQQPWPTP NSPSAHYRPP PNLNQPQNGS AGYYRPPAPQ LQNSQARPQK KDGFSQFMPS 720
721 ATTKNPYAQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [792-865] |
1 11 21 31 41 51
| | | | | |
1 DDIERQYITE HRSRHEVPKR SPEKPSNPLE IGNPYAKPGT RLNTTHTHSK TDRSITPQRG 60
61 QPVPSGQQIS SYVQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [866-1060] |
1 11 21 31 41 51
| | | | | |
1 PANINSPNKM YGANNSAMGS PRNPKTRAPP GPYNQGWNNR PSPSNIYQRP HPSDTQPQAY 60
61 HLPGNPYSTG NRPNMQAQYH PQQVPMPILQ QPNRPYQPYA MNTHMGSPGG YAGAAPPFQP 120
121 ANVNYNTRPQ QPWPTPNSPS AHYRPPPNLN QPQNGSAGYY RPPAPQLQNS QARPQKKDGF 180
181 SQFMPSATTK NPYAQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
