Protein Overview: gi|42519186, gi|...

General Information:
Name(s) found:	gi\|42519186 [NCBI NR] gi\|41583473 [NCBI NR]
Description(s) found: Found 4 descriptions. SHOW ALL	gi\|42519186\|ref\|NP_965116.1\| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucoside-specific [Lactobacillus johnsonii NCC 533] [NCBI NR] gi\|41583473\|gb\|AAS09082.1\| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable beta-glucoside-specific [Lactobacillus johnsonii NCC 533] [NCBI NR]
Organism:	Lactobacillus johnsonii NCC 533
Length:	730 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSYKEVAE KILVAVGGAE NINEVFNCIS RLRFYLKDSK KVNYPKLKLI PAISESEFED  60
   61 GQLQILLGQD VELYYDALVH LLKQKNISGG EKKMSKVDEK DKKLAEEIVK LVGGKDNVIS 120
  121 LVHCATRLRF KLKDESKADD NAIKQLKGVM GVAHAGGQYQ VIIGNNVADV YDQVIPLLGL 180
  181 SQDHKENTNK DKNIVNRFIK LLTTIFTPFL GVLAAAGVLK GFLTLLVVLH VLNTKSGTYL 240
  241 ILYAAGDALF YFLPVMIGFS TARTFKINEY VGAIIGAALC YPSLVQAYQM KQSIQFFNIP 300
  301 VILMNYTQTL IPAIIAVWLA SILYKFLNNY LPSSLKLIFT PLITLMIAVP LTFLVVGPAT 360
  361 SWASEELTYS ILWIYAHARV VAGFILAGIW QAVVLLGLHW AFIPIFLNNI ATRGFDPIDA 420
  421 MLYCTVFGQT GAALALVLKA KDSKFKEIGW PAVISGFLGV TEPIIYGVTL PHKKSFILGS 480
  481 IGSAFGGAIA AFSNAKMFGG FASGGIFGIP MFIDQKAGIN GSFMGFCLSL LVAFGIAFIS 540
  541 TLIWGDKIVS TTSKKDFKVK RVEFKDQGIA SPVQGTALEL KNVDDPVFSA GTIGKGIAVQ 600
  601 PNNDEIHAPF DGEVVSVFPT KHAIGLKSDN GVELLIHLGI NTVNLKGKYF EVKVEVGQKV 660
  661 KQGDLLETFD VDKIKAAGYD TVVPIIVTNA NNFDDIIIEK KNGDSVRFED QILMATVDQE 720
  721 VEIPDNATQA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

No microscopy data found in the PDR for this protein.

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..86]	PSI-BLAST	17.221849	Glucose permease domain IIB
2	View Details	[87..177]	PSI-BLAST	7.522879	No description for 2r48A was found.
3	View Details	[178..354]	MSA	2.65099	View MSA. No confident structure predictions are available.
4	View Details	[355..440]	deduced	N/A	No confident structure predictions are available.
5	View Details	[441..554]	MSA	3.649996	View MSA. No confident structure predictions are available.
6	View Details	[555..730]	PSI-BLAST	40.69897	Glucose-specific factor III (glsIII)

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

2

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.08041453921791	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.49138214292642	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.83892097143526	bayes_pls_golite062009
sugar transmembrane transporter activity	1.77053981674308	bayes_pls_golite062009
transporter activity	1.6837050020547	bayes_pls_golite062009
transmembrane transporter activity	1.5685227361887	bayes_pls_golite062009
substrate-specific transporter activity	1.32293422112884	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.217268678967	bayes_pls_golite062009
active transmembrane transporter activity	1.12964417923438	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	0.71593290802554	bayes_pls_golite062009
beta-glucoside transmembrane transporter activity	0.50967675887857	bayes_pls_golite062009
binding	0.472595683811139	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.37663629577414	bayes_pls_golite062009
fructose transmembrane transporter activity	0.225562559709031	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0296784994545702	bayes_pls_golite062009

3

No functions predicted.

4

No functions predicted.

5

No functions predicted.

6

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	3.63095060058431	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	2.68179471492286	bayes_pls_golite062009
binding	0.587569240975485	bayes_pls_golite062009
transporter activity	0.416424316903358	bayes_pls_golite062009
transmembrane transporter activity	0.245554686788991	bayes_pls_golite062009
active transmembrane transporter activity	0.00716122418063003	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

Philius confidence legend

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle