YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42519186, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	201	0.89
Transmembrane Helix	202	224	0.84
Non-Cytoplasmic	225	238	0.66
Transmembrane Helix	239	260	0.91
Cytoplasmic	261	269	0.70
Transmembrane Helix	270	288	0.90
Non-Cytoplasmic	289	305	0.73
Transmembrane Helix	306	327	0.86
Cytoplasmic	328	336	0.75
Transmembrane Helix	337	360	0.88
Non-Cytoplasmic	361	379	0.71
Transmembrane Helix	380	403	0.88
Cytoplasmic	404	419	0.69
Transmembrane Helix	420	440	0.81
Non-Cytoplasmic	441	447	0.66
Transmembrane Helix	448	470	0.85
Cytoplasmic	471	475	0.69
Transmembrane Helix	476	500	0.77
Non-Cytoplasmic	501	520	0.58
Transmembrane Helix	521	545	0.88
Cytoplasmic	546	730	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSYKEVAE KILVAVGGAE NINEVFNCIS RLRFYLKDSK KVNYPKLKLI PAISESEFED  60
   61 GQLQILLGQD VELYYDALVH LLKQKNISGG EKKMSKVDEK DKKLAEEIVK LVGGKDNVIS 120
  121 LVHCATRLRF KLKDESKADD NAIKQLKGVM GVAHAGGQYQ VIIGNNVADV YDQVIPLLGL 180
  181 SQDHKENTNK DKNIVNRFIK LLTTIFTPFL GVLAAAGVLK GFLTLLVVLH VLNTKSGTYL 240
  241 ILYAAGDALF YFLPVMIGFS TARTFKINEY VGAIIGAALC YPSLVQAYQM KQSIQFFNIP 300
  301 VILMNYTQTL IPAIIAVWLA SILYKFLNNY LPSSLKLIFT PLITLMIAVP LTFLVVGPAT 360
  361 SWASEELTYS ILWIYAHARV VAGFILAGIW QAVVLLGLHW AFIPIFLNNI ATRGFDPIDA 420
  421 MLYCTVFGQT GAALALVLKA KDSKFKEIGW PAVISGFLGV TEPIIYGVTL PHKKSFILGS 480
  481 IGSAFGGAIA AFSNAKMFGG FASGGIFGIP MFIDQKAGIN GSFMGFCLSL LVAFGIAFIS 540
  541 TLIWGDKIVS TTSKKDFKVK RVEFKDQGIA SPVQGTALEL KNVDDPVFSA GTIGKGIAVQ 600
  601 PNNDEIHAPF DGEVVSVFPT KHAIGLKSDN GVELLIHLGI NTVNLKGKYF EVKVEVGQKV 660
  661 KQGDLLETFD VDKIKAAGYD TVVPIIVTNA NNFDDIIIEK KNGDSVRFED QILMATVDQE 720
  721 VEIPDNATQA