| Protein: | gi|42519186, gi|... |
| Organism: | Lactobacillus johnsonii NCC 533 |
| Length: | 730 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42519186, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
524.0 | [0..3] | [727..2] |
|
|
440.0 | [0..99] | [718..1] |
|
|
434.0 | [0..99] | [715..1] |
|
|
432.0 | [0..93] | [715..18] |
|
|
432.0 | [0..93] | [715..18] |
|
|
431.0 | [0..99] | [716..1] |
|
|
431.0 | [0..99] | [715..1] |
|
|
429.0 | [0..101] | [715..1] |
|
|
429.0 | [0..99] | [715..1] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MNNSYKEVAE KILVAVGGAE NINEVFNCIS RLRFYLKDSK KVNYPKLKLI PAISESEFED 60
61 GQLQILLGQD VELYYDALVH LLKQKN
|
| Detection Method: |  |
| Confidence: | 17.221849 |
| Match: | 1o2fB |
| Description: | Glucose permease domain IIB |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.61117010765727 | bayes_pls_golite062009 |
|
Region A: Residues: [87-177] |
1 11 21 31 41 51
| | | | | |
1 ISGGEKKMSK VDEKDKKLAE EIVKLVGGKD NVISLVHCAT RLRFKLKDES KADDNAIKQL 60
61 KGVMGVAHAG GQYQVIIGNN VADVYDQVIP L
|
| Detection Method: | |
| Confidence: | 7.522879 |
| Match: | 2r48A |
| Description: | No description for 2r48A was found. |
|
Region A: Residues: [178-354] |
1 11 21 31 41 51
| | | | | |
1 LGLSQDHKEN TNKDKNIVNR FIKLLTTIFT PFLGVLAAAG VLKGFLTLLV VLHVLNTKSG 60
61 TYLILYAAGD ALFYFLPVMI GFSTARTFKI NEYVGAIIGA ALCYPSLVQA YQMKQSIQFF 120
121 NIPVILMNYT QTLIPAIIAV WLASILYKFL NNYLPSSLKL IFTPLITLMI AVPLTFL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [355-440] |
1 11 21 31 41 51
| | | | | |
1 VVGPATSWAS EELTYSILWI YAHARVVAGF ILAGIWQAVV LLGLHWAFIP IFLNNIATRG 60
61 FDPIDAMLYC TVFGQTGAAL ALVLKA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [441-554] |
1 11 21 31 41 51
| | | | | |
1 KDSKFKEIGW PAVISGFLGV TEPIIYGVTL PHKKSFILGS IGSAFGGAIA AFSNAKMFGG 60
61 FASGGIFGIP MFIDQKAGIN GSFMGFCLSL LVAFGIAFIS TLIWGDKIVS TTSK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [555-730] |
1 11 21 31 41 51
| | | | | |
1 KDFKVKRVEF KDQGIASPVQ GTALELKNVD DPVFSAGTIG KGIAVQPNND EIHAPFDGEV 60
61 VSVFPTKHAI GLKSDNGVEL LIHLGINTVN LKGKYFEVKV EVGQKVKQGD LLETFDVDKI 120
121 KAAGYDTVVP IIVTNANNFD DIIIEKKNGD SVRFEDQILM ATVDQEVEIP DNATQA
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 1ggrA |
| Description: | Glucose-specific factor III (glsIII) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein-N(PI)-phosphohistidine-sugar phosphotransferase activity | 3.63095060058431 | bayes_pls_golite062009 |
| carbohydrate transmembrane transporter activity | 2.68179471492286 | bayes_pls_golite062009 |
| binding | 0.587569240975485 | bayes_pls_golite062009 |
| transporter activity | 0.416424316903358 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.245554686788991 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.00716122418063003 | bayes_pls_golite062009 |
