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Protein Overview: puf-8

General Information:
Name(s) found: puf-8 / CE37486 [WormBase]
Description(s) found:
Found 14 descriptions.
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  • WBGene00004244 locus:puf-8 status:Confirmed UniProt:Q09487 protein_id:CCD66262.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 535 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IDALink to PubMed article]
    Biological Process: feminization of hermaphroditic germ-line [IMPLink to PubMed article]
    spermatogenesis [IMPLink to PubMed article]
    regulation of meiosis [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed articleLink to PubMed article]
    meiosis [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article][ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPISIGNT CTFDPSASPI ESLGRSIGAQ KIVDSVCGSP IRSYGRHIST NPKNERLPDT  60
   61 PEFQFATYMH QGGKVIGQNT LHMFGTPPSC YCAQENIPIS SNVGHVLSTI NNNYMNHQYN 120
  121 GSNMFSNQMT QMLQAQAYND LQMHQAHSQS IRVPVQPSAT GIFSNPYREP TTTDDLLTRY 180
  181 RANPAMMKNL KLSDIRGALL KFAKDQVGSR FIQQELASSK DRFEKDSIFD EVVSNADELV 240
  241 DDIFGNYVVQ KFFEYGEERH WARLVDAIID RVPEYAFQMY ACRVLQKALE KINEPLQIKI 300
  301 LSQIRHVIHR CMKDQNGNHV VQKAIEKVSP QYVQFIVDTL LESSNTIYEM SVDPYGCRVV 360
  361 QRCLEHCSPS QTKPVIGQIH KRFDEIANNQ YGNYVVQHVI EHGSEEDRMV IVTRVSNNLF 420
  421 EFATHKYSSN VIEKCLEQGA VYHKSMIVGA ACHHQEGSVP IVVQMMKDQY ANYVVQKMFD 480
  481 QVTSEQRREL ILTVRPHIPV LRQFPHGKHI LAKLEKYFQK PAVMSYPYQD MQGSH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] MSA 41.322997 View MSA. No confident structure predictions are available.
    2 View Details [153..535] PSI-BLAST 118.0 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.72717267135753 bayes_pls_golite062009
  • protein binding
    		•  1.01840651819417 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.726577126409925 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.198921736439162 bayes_pls_golite062009
  • translation regulator activity
    		•  0.1178495560226 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.10960901634151 bayes_pls_golite062009
  • catalytic activity
    		•  0.0114279309788371 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle