| Protein: | puf-8 |
| Organism: | Caenorhabditis elegans |
| Length: | 535 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for puf-8.
| Description | E-value | Query Range |
Subject Range |
|
|
467.0 | [0..23] | [521..563] |
|
Region A: Residues: [1-152] |
1 11 21 31 41 51
| | | | | |
1 MSRPISIGNT CTFDPSASPI ESLGRSIGAQ KIVDSVCGSP IRSYGRHIST NPKNERLPDT 60
61 PEFQFATYMH QGGKVIGQNT LHMFGTPPSC YCAQENIPIS SNVGHVLSTI NNNYMNHQYN 120
121 GSNMFSNQMT QMLQAQAYND LQMHQAHSQS IR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [153-535] |
1 11 21 31 41 51
| | | | | |
1 VPVQPSATGI FSNPYREPTT TDDLLTRYRA NPAMMKNLKL SDIRGALLKF AKDQVGSRFI 60
61 QQELASSKDR FEKDSIFDEV VSNADELVDD IFGNYVVQKF FEYGEERHWA RLVDAIIDRV 120
121 PEYAFQMYAC RVLQKALEKI NEPLQIKILS QIRHVIHRCM KDQNGNHVVQ KAIEKVSPQY 180
181 VQFIVDTLLE SSNTIYEMSV DPYGCRVVQR CLEHCSPSQT KPVIGQIHKR FDEIANNQYG 240
241 NYVVQHVIEH GSEEDRMVIV TRVSNNLFEF ATHKYSSNVI EKCLEQGAVY HKSMIVGAAC 300
301 HHQEGSVPIV VQMMKDQYAN YVVQKMFDQV TSEQRRELIL TVRPHIPVLR QFPHGKHILA 360
361 KLEKYFQKPA VMSYPYQDMQ GSH
|
| Detection Method: | |
| Confidence: | 118.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.72717267135753 | bayes_pls_golite062009 |
| protein binding | 1.01840651819417 | bayes_pls_golite062009 |
| nucleic acid binding | 0.726577126409925 | bayes_pls_golite062009 |
| transcription regulator activity | 0.198921736439162 | bayes_pls_golite062009 |
| translation regulator activity | 0.1178495560226 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.10960901634151 | bayes_pls_golite062009 |
| catalytic activity | 0.0114279309788371 | bayes_pls_golite062009 |
