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Protein Overview: gi|20385491, gi|...

General Information:
Name(s) found: gi|51968752 [NCBI NR]
gi|30794104 [NCBI NR]
gi|30793885 [NCBI NR]
gi|30697677 [NCBI NR]
gi|21593438 [NCBI NR]
gi|20385491 [NCBI NR]
gi|110739286 [NCBI NR]
Description(s) found:
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  • gi|51968752|dbj|BAD43068.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|30794104|gb|AAP40494.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30793885|gb|AAP40395.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30697677|ref|NP_201050.2| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21593438|gb|AAM65405.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|20385491|gb|AAM21312.1|AF371327_1 EMB514 [Arabidopsis thaliana] [NCBI NR]
  • gi|110739286|dbj|BAF01556.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|30793885|gb|AAP40395.1| unknown protein [Arabidopsis thaliana]gi|21593438|gb|AAM65405.1| unknown [Arabidopsis thaliana]gi|20385491|gb|AAM21312.1| EMB514 [Arabidopsis thaliana]gi|51968752|dbj|BAD43068.1| unnamed [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domi [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • EMB514 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. | chr5:25089846-25091143 REVERSE [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Protein of unknown function (DUF3223) | chr5:25072620-25073917 REVERSE LENGTH=202 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • EMB514 OS=Arabidopsis thaliana GN=EMB514 PE=2 SV=1 [ARATH-contam.fasta]
  • EMB514 OS=Arabidopsis thaliana GN=EMB514 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 202 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: embryonic development [IMP]
    regulation of cell division [IMP]
    nucleologenesis [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE  60
   61 EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY EHMVLLDLIK KGHSEPEKKI 120
  121 GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG 180
  181 GRGGGGGRRG GRGGGRGGRF RR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] MSA 22.031996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle