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Protein Overview: VP35A_ARATH

General Information:
Name(s) found: VP35A_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 787 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular protein transport [IGI][ISS]
    retrograde transport, endosome to Golgi [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIADGSEDEE KWLAAGAAAF KQNAFYMQRA IDSNNLKDAL KYSAQMLSEL RTSKLSPHKY  60
   61 YDLYMRAFDE LRKLEIFFME ETRRGCSVIE LYELVQHAGN ILPRLYLLCT AGSVYIKTKE 120
  121 APAKEILKDL VEMCRGIQHP LRGLFLRSYL AQISRDKLPD IGSEYEGDAD TVIDAVEFVL 180
  181 LNFTEMNKLW VRMQHQGPAR EKERREKERG ELRDLVGKNL HVLSQLEGVD LDMYRDTVLP 240
  241 RVLEQIVNCR DEIAQYYLID CIIQVFPDEY HLQTLDVLLG ACPQLQASVD IMTVLSRLME 300
  301 RLSNYAALNA EVLPYFLQVE AFSKLNNAIG KVIEAQEDMP ILSAVTLYSS LLKFTLHVHP 360
  361 DRLDYADQVL GSCVKQLSGK GKIDDTRATK ELVSLLSAPL EKYNDVVTAL KLTNYPLVVE 420
  421 YLDTETKRIM ATVIVRSIMK NNTLITTAEK VEALFELIKG IINDLDEPQG LEVDEDDFQE 480
  481 EQNSVALLIH MLYNDDPEEM FKIVNVLKKH FLTGGPKRLK FTIPPLVVST LKLIRRLPVE 540
  541 GDNPFGKEAS VTATKIFQFL NQIIEALPNV PSPDLAFRLY LQCAEAADKC DEEPIAYEFF 600
  601 TQAYILYEEE ISDSKAQVTA LQLIIGTLQR MQVFGVENRD TLTHKATGYA AKLLKKPDQC 660
  661 RAVYACSHLF WLEDRETIQD GERVLLCLKR ALKIANSAQQ VANTARGSTG SVTLFIEILN 720
  721 KYLYFYEKGV PQITVESVES LIKLIKNEES MPSDPSAESF FATTLEFMEF QKQKEGAIGE 780
  781 RYQAIKV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] MSA 4.06396 View MSA. No confident structure predictions are available.
    2 View Details [175..350] MSA 1.06799 View MSA. No confident structure predictions are available.
    3 View Details [351..471] MSA 1.068986 View MSA. No confident structure predictions are available.
    4 View Details [472..787] PSI-BLAST 89.39794 No description for 2r17C was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle