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Protein Overview: gi|15223823, gi|...

General Information:
Name(s) found: gi|30725506 [NCBI NR]
gi|20260482 [NCBI NR]
gi|15223823 [NCBI NR]
Description(s) found:
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  • gi|30725506|gb|AAP37775.1| At1g51350 [Arabidopsis thaliana] [NCBI NR]
  • gi|20260482|gb|AAM13139.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15223823|ref|NP_175546.1| armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • At1g51350 [Arabidopsis thaliana]gi|20260482|gb|AAM13139.1| unknown protein [Arabidopsis thaliana]gi|15223823|ref|NP_175546.1| armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Armadillo/beta-catenin repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | armadillo/beta-catenin repeat family protein | chr1:19039519-19042406 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g51350 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ARM repeat superfamily protein | chr1:19035851-19038738 FORWARD LENGTH=666 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Armadillo/beta-catenin-like repeats-containing protein OS=Arabidopsis thaliana GN=At1g51350 PE=2 SV=1 [ARATH-contam.fasta]
  • ARM repeat superfamily protein OS=Arabidopsis thaliana GN=At1g51350 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 666 amino acids

    Gene Ontology:
    Cellular Component: chloroplast thylakoid lumen [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTTTTSSAS SSSSASGNNR QSDVFSRLAS SDPEVKLKAL REVKNQIIGN RTKKLSFLKL  60
   61 GAIPAIASVL ADADDSDECN NILVQSAAAL GSFACGFEAG VQAVLDAGVF PHLLRLLTNT 120
  121 DEKVVDAGAR SLRMIFQSNQ APKYDFLQEK NMEFLFSLLN SENENVSGLG ASIIAHACGT 180
  181 SVEQRVLCEA GVLEKLVILL DGSLSQREAC LESLATVLKN NPEAVSDFVG LESGKYFNSV 240
  241 TELTKDRYPR TRLLSCLCLV VIYNTSPSYF INMGTKSSLI TTLLELLNDP GQSGDDAALG 300
  301 LSCLIAEKED LQQLAYEADA IKNIVEILKT GSELQSKRLQ GLFLSLAELC SKLEDCRCSF 360
  361 LSLQVLDLLT DALRHKDADV RAAACICFRN AARSVKSLSA GRFNSDHVML PLVQLLHDPS 420
  421 SSVQVAVLGA LNNIVMDFSS PKSSFIEYGG IKQLTELSKS MDPNTRCSAL RALRNLMFLA 480
  481 DIKRKELFYS DVKAQGLACL ISDPEPPVQE QALALLRNLV DGCISSIEFV FDEDGLILDT 540
  541 VGRQLRKAPQ AQMAIQGMYV LTNVASGTEL HKEAVMEQLF PQAKAGSENF MLKFLQSDES 600
  601 QLRSAAVWTI INLISPSSPG AFDRHVKLRN AGIIPQLKNM VNDACLDVKI RIRTVLGQSM 660
  661 SFGDNY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..440] PSI-BLAST 57.69897 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP
    2 View Details [441..598] PSI-BLAST 18.39794 Kap95p:RanGTP complex
    3 View Details [599..666] PSI-BLAST 75.0 Importin alpha

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.786930091838216 bayes_pls_golite062009
  • protein binding
    		•  0.273418027792729 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle