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Protein Overview: PARNL_ARATH

General Information:
Name(s) found: PARNL_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 618 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: RNA modification [ISS]
    Molecular Function: nucleic acid binding [IEA]
    ribonuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRFLSSIS ATAGNTKTLN QGRWSVKQVK KSNFHVTLDE IRTSIDSSDF IALSLQNTGS  60
   61 YAAAWHRVSA IDTPQTSYLK AKYAAERYQI LQFALCPFSL QGSKLTVHPY NFHLFPRDEL 120
  121 KCGMPSYSFS CQASRLTAMA REGFDFNICI YEGISYLSRA QESASKFLSE NPILADSVTV 180
  181 SSSPATVADT VFVGRIRSRV KNWRQSCIDS GSKTGDDDLV SSLRRLVLGS EQYGSRLCLT 240
  241 IDVCSERQVQ LILEMLTEFS DDVVPLLVAS KSRGTQAVRT VFMSSKEDKD LFKRELKDLE 300
  301 KEENRRVRGF REVVDFISSS QKPVVSQNYL SDFTSIHAKF LGPLPSNVDD FSSSLSSAFP 360
  361 NVVDLSQFMK EISPLSNISN LPAAMSSLNR FFAPVDVEVA NQGCPVKLDE GHQSHGQNAV 420
  421 MISQLFAKLC TIQKSDLSTI QSNEDFQALA SDEHANSVTS CSKNAGDENV KVWSKNSRRV 480
  481 SSENLVFIWG LGKKMTAAKL KNVLQKSHPV FAREFDVKYI DRSSAILVFW ESGPSETFLS 540
  541 AVNNEEQLDG SLREMVAEGL RGAGYETYKR ACRLGFWEAD LAESLDKALE SSDTDPDSDT 600
  601 KPSEIDWSNE LAINFDEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..469] PSI-BLAST 100.0 Crystal structure of PARN nuclease domain
    2 View Details [470..618] PSI-BLAST 14.30103 Solution structure of the RNA binding domain from hypothetical protein BAB23382

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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