| Protein: | PARNL_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 618 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PARNL_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
543.0 | [0..1] | [606..1] |
|
Region A: Residues: [1-469] |
1 11 21 31 41 51
| | | | | |
1 MQRRFLSSIS ATAGNTKTLN QGRWSVKQVK KSNFHVTLDE IRTSIDSSDF IALSLQNTGS 60
61 YAAAWHRVSA IDTPQTSYLK AKYAAERYQI LQFALCPFSL QGSKLTVHPY NFHLFPRDEL 120
121 KCGMPSYSFS CQASRLTAMA REGFDFNICI YEGISYLSRA QESASKFLSE NPILADSVTV 180
181 SSSPATVADT VFVGRIRSRV KNWRQSCIDS GSKTGDDDLV SSLRRLVLGS EQYGSRLCLT 240
241 IDVCSERQVQ LILEMLTEFS DDVVPLLVAS KSRGTQAVRT VFMSSKEDKD LFKRELKDLE 300
301 KEENRRVRGF REVVDFISSS QKPVVSQNYL SDFTSIHAKF LGPLPSNVDD FSSSLSSAFP 360
361 NVVDLSQFMK EISPLSNISN LPAAMSSLNR FFAPVDVEVA NQGCPVKLDE GHQSHGQNAV 420
421 MISQLFAKLC TIQKSDLSTI QSNEDFQALA SDEHANSVTS CSKNAGDEN
|
| Detection Method: |  |
| Confidence: | 100.0 |
| Match: | 2a1rA |
| Description: | Crystal structure of PARN nuclease domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [470-618] |
1 11 21 31 41 51
| | | | | |
1 VKVWSKNSRR VSSENLVFIW GLGKKMTAAK LKNVLQKSHP VFAREFDVKY IDRSSAILVF 60
61 WESGPSETFL SAVNNEEQLD GSLREMVAEG LRGAGYETYK RACRLGFWEA DLAESLDKAL 120
121 ESSDTDPDSD TKPSEIDWSN ELAINFDEL
|
| Detection Method: | |
| Confidence: | 14.30103 |
| Match: | 1whvA |
| Description: | Solution structure of the RNA binding domain from hypothetical protein BAB23382 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
