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Protein Overview: RNZ_YEAST

General Information:
Name(s) found: RNZ_YEAST [Swiss-Prot]
Description(s) found:
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  • Ribonuclease Z OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRZ1 PE=1 SV=1 [Swiss-Prot]
  • Trz1p [Saccharomyces cerevisiae] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 838 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTFIPITHP TSDTKHPLLL VQSAHGEKYF FGKIGEGSQR SLTENKIRIS KLKDIFLTGE  60
   61 LNWSDIGGLP GMILTIADQG KSNLVLHYGN DILNYIVSTW RYFVFRFGID LNDHIMKDKE 120
  121 VYKDKIIAVK SFNVLKNGGE DRLGVFDSFQ KGVLRSIVAK MFPKHAPTDR YDPSSDPHLN 180
  181 VELPDLDAKV EVSTNYEISF SPVRGKFKVE EAIKLGVPKG PLFAKLTKGQ TITLDNGIVV 240
  241 TPEQVLENER HFAKVLILDI PDDLYLNAFV EKFKDYDCAE LGMVYYFLGD EVTINDNLFA 300
  301 FIDIFEKNNY GKVNHMISHN KISPNTISFF GSALTTLKLK ALQVNNYNLP KTDRVFSKDF 360
  361 YDRFDTPLSR GTSMCKSQEE PLNTIIEKDN IHIFSQNKTV TFEPFRMNEE PMKCNINGEV 420
  421 ADFSWQEIFE EHVKPLEFPL ADVDTVINNQ LHVDNFNNSA EKKKHVEIIT LGTGSALPSK 480
  481 YRNVVSTLVK VPFTDADGNT INRNIMLDAG ENTLGTIHRM FSQLAVKSIF QDLKMIYLSH 540
  541 LHADHHLGII SVLNEWYKYN KDDETSYIYV VTPWQYHKFV NEWLVLENKE ILKRIKYISC 600
  601 EHFINDSFVR MQTQSVPLAE FNEILKENSN QESNRKLELD RDSSYRDVDL IRQMYEDLSI 660
  661 EYFQTCRAIH CDWAYSNSIT FRMDENNEHN TFKVSYSGDT RPNIEKFSLE IGYNSDLLIH 720
  721 EATLENQLLE DAVKKKHCTI NEAIGVSNKM NARKLILTHF SQRYPKLPQL DNNIDVMARE 780
  781 FCFAFDSMIV DYEKIGEQQR IFPLLNKAFV EEKEEEEDVD DVESVQDLEV KLKKHKKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..204] Pcons 1.66 Glyoxalase II (hydroxyacylglutathione hydrolase)
    2 View Details [205..308] Pcons 1.66 Glyoxalase II (hydroxyacylglutathione hydrolase)
    3 View Details [309..456] deduced N/A No confident structure predictions are available.
    4 View Details [457..639] PSI-BLAST 4.30103 Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain; Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain
    5 View Details [640..838] MSA 3.267975 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.25638799652541 bayes_pls_golite062009
  • 3'-tRNA processing endoribonuclease activity
    		•  0.998280249151351 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.980281910076056 bayes_pls_golite062009
  • catalytic activity
    		•  0.941400907161877 bayes_pls_golite062009
  • RNA binding
    		•  0.794779546418275 bayes_pls_golite062009
  • protein binding
    		•  0.0732519352239051 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.31163219351982 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.995499818152009 bayes_pls_golite062009
  • catalytic activity
    		•  0.888964130802536 bayes_pls_golite062009
  • RNA binding
    		•  0.752641444664237 bayes_pls_golite062009
  • 3'-tRNA processing endoribonuclease activity
    		•  0.6076643116915 bayes_pls_golite062009
  • protein binding
    		•  0.104060533429009 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.25638799652541 bayes_pls_golite062009
  • 3'-tRNA processing endoribonuclease activity
    		•  0.998280249151351 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.980281910076056 bayes_pls_golite062009
  • catalytic activity
    		•  0.941400907161877 bayes_pls_golite062009
  • RNA binding
    		•  0.794779546418275 bayes_pls_golite062009
  • protein binding
    		•  0.0732519352239051 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle