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Protein Overview: LCD1_YEAST

General Information:
Name(s) found: LCD1_YEAST [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • DNA damage checkpoint protein LCD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCD1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 747 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRETVGEFS SDDDDDILLE LGTRPPRFTQ IPPSSAALQT QIPTTLEVTT TTLNNKQSKN  60
   61 DNQLVNQLNK AQGEASMLRD KINFLNIERE KEKNIQAVKV NELQVKHLQE LAKLKQELQK 120
  121 LEDEKKFLQM EARGKSKREV ITNVKPPSTT LSTNTNTITP DSSSVAIEAK PQSPQSKKRK 180
  181 ISDNLLKKNM VPLNPNRIIP DETSLFLESI LLHQIIGADL STIEILNRLK LDYITEFKFK 240
  241 NFVIAKGAPI GKSIVSLLLR CKKTLTLDRF IDTLLEDIAV LIKEISVHPN ESKLAVPFLV 300
  301 ALMYQIVQFR PSATHNLALK DCFLFICDLI RIYHHVLKVP IHESNMNLHV EPQIFQYELI 360
  361 DYLIISYSFD LLEGILRVLQ SHPKQTYMEF FDENILKSFE FVYKLALTIS YKPMVNVIFS 420
  421 AVEVVNIITS IILNMDNSSD LKSLISGSWW RDCITRLYAL LEKEIKSGDV YNENVDTTTL 480
  481 HMSKYHDFFG LIRNIGDNEL GGLISKLIYT DRLQSVPRVI SKEDIGMDSD KFTAPIIGYK 540
  541 MEKWLLKLKD EVLNIFENLL MIYGDDATIV NGEMLIHSSK FLSREQALMI ERYVGQDSPN 600
  601 LDLRCHLIEH TLTIIYRLWK DHFKQLREEQ IKQVESQLIM SLWRFLVCQT ETVTANEREM 660
  661 RDHRHLVDSL HDLTIKDQAS YYEDAFEDLP EYIEEELKMQ LNKRTGRIMQ VKYDEKFQEM 720
  721 ARTILESKSF DLTTLEEADS LYISMGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] deduced N/A No confident structure predictions are available.
    2 View Details [195..284] ORFEUS 8.0 CBP80, 80KDa nuclear cap-binding protein
    3 View Details [285..566] ORFEUS 8.0 CBP80, 80KDa nuclear cap-binding protein
    4 View Details [567..747] ORFEUS 7.09 Hemolysin E (HlyE, ClyA, SheA)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.96084803796407 bayes_pls_golite062009
  • protein transporter activity
    		•  2.47190066960729 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.67566088591721 bayes_pls_golite062009
  • protein binding
    		•  1.61131270705552 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.845665181662967 bayes_pls_golite062009
  • DNA binding
    		•  0.806448013051712 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.795583320946118 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.66737572008694 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.65168535727044 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.384349606267362 bayes_pls_golite062009
  • structural molecule activity
    		•  0.279533827088985 bayes_pls_golite062009
  • transcription factor activity
    		•  0.131703572961748 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  2.96084803796407 bayes_pls_golite062009
  • protein transporter activity
    		•  2.47190066960729 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.67566088591721 bayes_pls_golite062009
  • protein binding
    		•  1.61131270705552 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.845665181662967 bayes_pls_golite062009
  • DNA binding
    		•  0.806448013051712 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.795583320946118 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.66737572008694 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.65168535727044 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.384349606267362 bayes_pls_golite062009
  • structural molecule activity
    		•  0.279533827088985 bayes_pls_golite062009
  • transcription factor activity
    		•  0.131703572961748 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle